Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01893 ATGTGTCAATATCTTCAACAACTCCAAAACTCAGAGAAGACCCCTTCCCTTTCGAGTAAGAAAAGGGTGCGCTGGACTACAGAGGAACACAGGTCATTTCTTATTGGGCTTGAGCAATGTGGTAAAGGAGATTGGATTAATATTGCAAGACAATTTGTTAAGTCAAAAACTCCAGTGCAAGTTGCTAGTCATGCCCAAAAGTACTTCATTCGCAATAGTGACATCACAAAAGAAAAGAAAAGAAGAAGCATCCATGACATAAACTTTGGGAAAAATGACTTGATCTCTGACCCCATTCAACCTTCACGAGAAACGTACCAGCTAAACCCACTATATGATATGCCTCATGAAATACCTGGATTCATGCTTGTTAATTTTAACAATGGGTTCCAAGACCAAGTACCCCTAATCTTGCCAGACAACGTGCTAGAGCTAAAGGACAAACTTCAGACAATAGATCAGGACATTGACATACCCTTTTGTGAGTTATGTCTTGTTGCACTTCGAAATTGCCTTGATAATTTGGTTCCAAACCGTGGCTCCCCTTCCCCAAATGAAGCTCCCTCCCTTCAGAAAAAGAAATACACGTATTGGACTGAAGATGAACATAGGGCATTTCTTATTGGGCTTGAGCAATGTGGTAAAGGAGATTGGAATAATATTGCAAGACAATTTGTTAAGTCAAAAACTCCAACGCAAGTTGCTAGTCATGCCCAGAAGTACTACATTCACCAGAGTGCCTCCGCAGAAGAACGCAAAAGATATAGCATCCATGACGTAACCTTAGAGGACAGACTTGGTCTCTCACCTCAATTTTCATGA 822 0.4088 MCQYLQQLQNSEKTPSLSSKKRVRWTTEEHRSFLIGLEQCGKGDWINIARQFVKSKTPVQVASHAQKYFIRNSDITKEKKRRSIHDINFGKNDLISDPIQPSRETYQLNPLYDMPHEIPGFMLVNFNNGFQDQVPLILPDNVLELKDKLQTIDQDIDIPFCELCLVALRNCLDNLVPNRGSPSPNEAPSLQKKKYTYWTEDEHRAFLIGLEQCGKGDWNNIARQFVKSKTPTQVASHAQKYYIHQSASAEERKRYSIHDVTLEDRLGLSPQFS. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01893 273 CDD SANT 198 241 IPR001005 -
Seca10g01893 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 193 245 IPR006447 GO:0003677
Seca10g01893 273 NCBIfam myb-like DNA-binding domain, SHAQKYF class 20 71 IPR006447 GO:0003677
Seca10g01893 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 198 246 IPR017930 -
Seca10g01893 273 SUPERFAMILY Homeodomain-like 191 246 IPR009057 -
Seca10g01893 273 ProSiteProfiles Myb-like domain profile. 198 242 IPR001005 -
Seca10g01893 273 FunFam transcription factor MYB1R1 23 74 - -
Seca10g01893 273 ProSiteProfiles SANT domain profile. 198 246 IPR017884 -
Seca10g01893 273 CDD SANT 24 69 IPR001005 -
Seca10g01893 273 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Seca10g01893 273 SMART sant 194 244 IPR001005 -
Seca10g01893 273 SMART sant 21 71 IPR001005 -
Seca10g01893 273 Pfam Myb-like DNA-binding domain 22 69 IPR001005 -
Seca10g01893 273 Pfam Myb-like DNA-binding domain 198 241 IPR001005 -
Seca10g01893 273 PANTHER TRANSCRIPTION FACTOR KUA1 12 96 - -
Seca10g01893 273 Gene3D - 23 75 - -
Seca10g01893 273 Gene3D - 195 246 - -
Seca10g01893 273 ProSiteProfiles Myb-like domain profile. 17 69 IPR001005 -
Seca10g01893 273 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 17 73 IPR017930 -
Seca10g01893 273 ProSiteProfiles SANT domain profile. 24 73 IPR017884 -
Seca10g01893 273 FunFam transcription factor MYB1R1 196 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01893 Seca-Chr10 21195868 21198617 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01893 Myb_DNA-binding 3.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01893 - - gtt:GUITHDRAFT_154251 110.538