Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01880 ATGGAAATCCACATAATAGAGTCATGTAGGTTTGTCATTAGCTTTGTAATTGTACTACTGCACCTCTTTTTCTTCTTCTTCTTCCATTTAACCACTTGTGATTCAAATTCAATAAACACCCCTTCAGATAAAATCCTCCTCAACTGTGGCTCTTCAGGATCATCATCATTCAATGGTGTAAATTGGATAGGAGATATTGGATCTAGTTTCTTGCCTCCAGCATATAACATGACTTCATCTACACTCTCAGTCTCAAACACAGCCCGTCTTGCACCAAAAGTCCCTTACTCAACAGCAAGAATAATTCGGTCTCCATTCACCTACTCATTCCCCTTCTCCCCTGGCCTTAAATTCATTCGTATTTACTTCCTCTCATCTTCATATTTGATGATGAACCCTTCCAAGGCTTATTTTTCTGTCAAAGCCGGTCCTTACACCCTTGTCAGTAATTTCAATCCATCTGTTGCTGCAAAAGATCTCAACTTGGTGTATATCACTAAGGATTTCTTGGTCAATGTCAGGGAAGAGAAGCTCAACATTACTTTCAGTCCATCTCCTCTAATTTCCAATGCGTTTGCTTTTGCAAATGGCATTGAAGTCTTCTCAGTGCCACACCGTATATACTTTCAAGGTTCTAAGGTTCCTGTTCCTTACCTTGGACACCAAGAACCATTGTTTATTAATGATGCATATGCTCTTGAGATGCTTTACGGGGTTGGTATAGAGGTCGAAAATGCCTTTGGGTCATGGTTGGATGATAAGAGCTACATATCTGGTTCACAATATGGAAGTGTCCTTAATATAAAGGGCCGTCCAGTTTCCATAAATTACACCACTTTCACATCAGATGATTATAATTATTCAGCACCAGTACAACTATATTGGACTGCCAGGACAATGGGTAGCAATGAAGATGCCAGCACAAGATACAATTTAACATGGTCATTCCCTGTTGACTCTGGATTCAAATACCTCGTTAGGCTTCATTTCTGTGAGATCTCCTTAGAGGTAACCCAGGTCAATCAAAGGGTGTTCAAGGTGTACATAAACAACCAAACAGCAGAGGAGAGTATGGACATTGTTGCTTTGGCTGGTGCTCCATTTACTCCTTTATACAGAGACTATGTTGTTATGGTTCCTATGGAAAGTGAGAGAAGGCAAGATATGTGGATAGCACTTCACCCCAACTTGGAGTCAAAACCAAAATATTCTGATGCCATATTGAATGGCGTTGAGATCATCAAGTTAAGTGATAGCAATTATAATCTTGCAGCAAGTTTCCAACTTGAAAAGGAACAAAAGGAGAAGAAGGTTCCACGAGTCATTGTTGTGGCTGCTACTTTAGGTGCCATTTTGGGGATGTTCATTACATTTTTCATTCTTATCCGAAGAGCATGGAAAAAGTTAAAGAGGGGAACTTCTCAGGTACTCCCATTTCGTTCTACTTCAAATCACAAAAAAATTCAAGTAACAGTGGCCTCAGATCATTGCTATCAATTCACATTAGCAGAGATCAGCATTGCCACCAGCAACTTCAGTGAAGCTCTTGTCATTGGGGAGGGAGGCTTTGGAAAGGTGTACAAAGGCATCTTGGCTGATGCTGATGAAGCTACTCATGTGGCAATAAAGCGCTCTAAGCCTAGTTCTCGCCAAGGATTTAAGGAGTTTCAAAATGAGATCAATTTTTTCTCATTTAGTCACATGAATCTAGTGTCATTGCTGGGCTACTGCCAGGAGGGCAATGAACTGATACTTGTCTATGAATACATGGCTCAGGGCCCTCTTTCTGATCATTTATACAAGAAACAAAAACAGCCACTTCCATGGAATCTAAGACTAAAGATTTGTGTTGGTGCAGCTCGAGGACTCCATTACCTCCATACAGGCACAAGGCATCCAGTGATTCACCGTGATATCAAGTCAGCCAACATATTATTGGATCAGAATTGGGTACCCAAGATTGCAGATTTTGGGTTATCTAGAATAGTTCCTTCAATTTACCACACCCATGTTAGCACTGAGGTTAAGGGTACTTTTGGATATCTAGACCCTGAGTACTATAAGCGAAGAAAACTGACTGAAAAATCTGATGTGTATTCATTTGGAGTGGTTTTGTTTGAAGTGTTATGTGGGAGACCAGCTGTGAATCCTGTGGCAGTGGAAGAGGAAAATGAGAAAGTTGGCTTGGTCGAGTGGGCCATGCATTGTCACCAATCAGGAAGTATTGATAGATTAATTGACCCACATTTAGAAAGACAGATAGGGCCAGAATGCCTAATGGCGTTTGTGGACATTGGCATTCAATGCTTGACTAACAAGAGTGCAGAAAGGCCAACTATGGGAGAGGTGTTAAGTAATTTGGAGAAGATCCTTTCCTGGCAGGAGAGTTTAGAGGAACAAGAAATCAATAAGCCCAGTTATGTTCCCTCAGAGAACATAGTTCTCAACTGTGGCTCTAACACAACTGAGTTTGTACAATATGATGGTAGGAACTGGACTGGTGACATTGCTTCACACATCAACTCCCTAATAGCCACAGCCCCTCCTACACTTCAATCCATTCCTCAAGTTCCCTATATGACTGCTCGCATCTTTCACTCTCAATTCACCTACAGATTCAATGTAACCCCAGGTCCAAAATTCATACGCCTTCACTTCTACCCAGCTTCCTACTTGGATCTCAATATCTCCAAAGCTTTCTTATCAGTCACTGCTGGTAACTTCACTCTTCTCCATAACTTTAGTGTTTCCCTCAATGCTGACTACTTAAACTTAGCATATTTCATGAAGGAATTCATTGTTCATGTAAATGGGAGCACTTTAGAACTTTCCCTTACCCCATCATCCAATGCTTCTGATGCCTATGCATTCGTGAATGGGATTGAAGTTGTTTCAATGCCCCTTGGTTTATACATTCGTGGTGATGATGCCCCTCTTCCTTTAGTTGGTCACGATCAAACATTGGTGTACATTCATAATGATTCCGCCATGGAAAGCTTATACAGATTGAATGTAGGAGGTGAGCAAATTCTACCCAAATATGATACGGCTATGTTTCGCACTTGGGACACTGATGATAGTTACATACTTGGAGCTAATATAGGTATTCAACCTTTTAATATAAGCATGCCAGTTGTGTATACAAATAATGTTCCAGCATATACTGCCCCTGAAAGCGTCTATAGAACATCCTGTTCAATGGGTCCCTTTGAGAACGGCCTTGTCAATTTAAATTACAACCAAACGTGGTTTTTTCCTGTTGATTCTGGCTTCAATTATCTAGTTAGGCTTCACTACTGTGAAGTTTTTAACGATATAACAAAGATCAATGAGGTAGTTTTTTCTGTATTTTTAAATAATCAAACAGCTGAAGAGCTGTTTGATCCAATTGCCGCAAGTGGGGGGCCTGGAGTTGCTGTGTACCGAGACTATGTTGTGATGGTTCCCGACAATGGTGAGGGAAAGCAGGATCTGTGGCTAGACTTGCATCCAAACAAGGATACTAAACCTGTGTACTACAATGCATTCTTGAATGGTGTAGAGATCTTTAAACTGAGTTTTGTTGATAAGAAGAATCTTGCAGGGCTTAACCCATCCATAAGGAAGTTTGGACCAGCTGTAAAGGCTCCCCATGTAGCACAGATTAAGCATTCAAAGAAACTCACATTCATCCTCATTGGATGTGGACTTGGTGCAGTGGTGGCACTACCAATTCTCCTGTGCTTAGTTCTATACAGGTTGAAGGTGATTAGACCAACAAGGATCATGTCATGGTGCGGTCTCATTGTCCTTCCACCCAATCAGGCAAACAAGTCATCATTTGGCAATCATTTTTCATTGAGAAAGATAAAAGTGGCAACATATGACTTTGATGAGGCTCTAATCATAGGCACAGGAGGATTTGGAAGTGTTTACAAGGGTAGCTTTGATGGTGGGGATACTTTTATAGCCATAAAACGTGGCAATCCAATGTCAGAACAAGGTGTTATAGAATTTGAGACAGAGATCCATCTGCTCTCACAGCTCCGGCACAACAACCTAGTCTCACTTTTAGGTTCTTGCAATGAAGATGGGGAGATGATATTGGTCTATGATTTCATGGCCAATGGAACTCTCTATGACCATCTTCACTTGAGGCAGAGAGATCAACCTCCTTTGTCATGGACTCAACGTCTTGAGATATGCATTGGAGTTGCAAGAGGTTTGCATTACCTACATACTGGCACACAACACAGGATCATTCACCGTGACATCAAGACAACCAACATACTCTTAGACCATAATTGGGTGGCCAAAATTTCAGATTTTGGGTTGTCAAAGGCAAGCTACCCTTCCTTAAACACCACCAACGTCAAGGGCAGCATTGGTTACCTAGATCCAGAGTATTTTCAATGCCACAAGTTGACTGAGAAATCTGATATATACTCACTTGGGGTGGTGTTATTGGAGGTGCTGAGTGCAAGGCCTGCTTTACTTCCAGATGAAGATGATGAGCATGTAAACTTGGCTGAATGGGCTGTGTTTTGCTTTGAAAATGACAATGTAGAGCAAATGGTGGACCCCAACTTAGAAGGAAACATAGTTAAGGAGTGCTTTGAATTATATTTAGAAGTTGCAATGAAATGTTTGGCAGAACAAGGGGTGGAGAGGCCATCCATTGGTGATGTGCTCCAGAACCTTGTTCTGGCATTGCAACTTCAGAAAAATCCTGGTACTTCCCGAGATGGAAATGTACATAGGAATGATAACACTGGTTTGCAGGGCTATTCAGATTTGACACCTGGGGTCGAGTTCTCTGAAATCACGATGCCTGTTGGCCGGTAA 4824 0.4142 MEIHIIESCRFVISFVIVLLHLFFFFFFHLTTCDSNSINTPSDKILLNCGSSGSSSFNGVNWIGDIGSSFLPPAYNMTSSTLSVSNTARLAPKVPYSTARIIRSPFTYSFPFSPGLKFIRIYFLSSSYLMMNPSKAYFSVKAGPYTLVSNFNPSVAAKDLNLVYITKDFLVNVREEKLNITFSPSPLISNAFAFANGIEVFSVPHRIYFQGSKVPVPYLGHQEPLFINDAYALEMLYGVGIEVENAFGSWLDDKSYISGSQYGSVLNIKGRPVSINYTTFTSDDYNYSAPVQLYWTARTMGSNEDASTRYNLTWSFPVDSGFKYLVRLHFCEISLEVTQVNQRVFKVYINNQTAEESMDIVALAGAPFTPLYRDYVVMVPMESERRQDMWIALHPNLESKPKYSDAILNGVEIIKLSDSNYNLAASFQLEKEQKEKKVPRVIVVAATLGAILGMFITFFILIRRAWKKLKRGTSQVLPFRSTSNHKKIQVTVASDHCYQFTLAEISIATSNFSEALVIGEGGFGKVYKGILADADEATHVAIKRSKPSSRQGFKEFQNEINFFSFSHMNLVSLLGYCQEGNELILVYEYMAQGPLSDHLYKKQKQPLPWNLRLKICVGAARGLHYLHTGTRHPVIHRDIKSANILLDQNWVPKIADFGLSRIVPSIYHTHVSTEVKGTFGYLDPEYYKRRKLTEKSDVYSFGVVLFEVLCGRPAVNPVAVEEENEKVGLVEWAMHCHQSGSIDRLIDPHLERQIGPECLMAFVDIGIQCLTNKSAERPTMGEVLSNLEKILSWQESLEEQEINKPSYVPSENIVLNCGSNTTEFVQYDGRNWTGDIASHINSLIATAPPTLQSIPQVPYMTARIFHSQFTYRFNVTPGPKFIRLHFYPASYLDLNISKAFLSVTAGNFTLLHNFSVSLNADYLNLAYFMKEFIVHVNGSTLELSLTPSSNASDAYAFVNGIEVVSMPLGLYIRGDDAPLPLVGHDQTLVYIHNDSAMESLYRLNVGGEQILPKYDTAMFRTWDTDDSYILGANIGIQPFNISMPVVYTNNVPAYTAPESVYRTSCSMGPFENGLVNLNYNQTWFFPVDSGFNYLVRLHYCEVFNDITKINEVVFSVFLNNQTAEELFDPIAASGGPGVAVYRDYVVMVPDNGEGKQDLWLDLHPNKDTKPVYYNAFLNGVEIFKLSFVDKKNLAGLNPSIRKFGPAVKAPHVAQIKHSKKLTFILIGCGLGAVVALPILLCLVLYRLKVIRPTRIMSWCGLIVLPPNQANKSSFGNHFSLRKIKVATYDFDEALIIGTGGFGSVYKGSFDGGDTFIAIKRGNPMSEQGVIEFETEIHLLSQLRHNNLVSLLGSCNEDGEMILVYDFMANGTLYDHLHLRQRDQPPLSWTQRLEICIGVARGLHYLHTGTQHRIIHRDIKTTNILLDHNWVAKISDFGLSKASYPSLNTTNVKGSIGYLDPEYFQCHKLTEKSDIYSLGVVLLEVLSARPALLPDEDDEHVNLAEWAVFCFENDNVEQMVDPNLEGNIVKECFELYLEVAMKCLAEQGVERPSIGDVLQNLVLALQLQKNPGTSRDGNVHRNDNTGLQGYSDLTPGVEFSEITMPVGR. 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01880 1607 FunFam Receptor-like protein kinase FERONIA 590 807 - -
Seca10g01880 1607 Gene3D Transferase(Phosphotransferase) domain 1 1367 1582 - -
Seca10g01880 1607 Gene3D Transferase(Phosphotransferase) domain 1 590 811 - -
Seca10g01880 1607 FunFam Receptor-like protein kinase FERONIA 1367 1582 - -
Seca10g01880 1607 FunFam FERONIA receptor-like kinase 44 204 - -
Seca10g01880 1607 Gene3D - 241 417 - -
Seca10g01880 1607 Gene3D - 45 203 - -
Seca10g01880 1607 Gene3D - 812 967 - -
Seca10g01880 1607 Gene3D - 995 1186 - -
Seca10g01880 1607 ProSitePatterns Protein kinases ATP-binding region signature. 518 543 IPR017441 GO:0005524
Seca10g01880 1607 SUPERFAMILY Protein kinase-like (PK-like) 486 788 IPR011009 -
Seca10g01880 1607 Pfam Protein kinase domain 1295 1559 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01880 1607 CDD STKc_IRAK 1296 1560 - -
Seca10g01880 1607 Gene3D Phosphorylase Kinase; domain 1 1276 1366 - -
Seca10g01880 1607 Pfam Protein tyrosine and serine/threonine kinase 517 787 IPR001245 GO:0004672|GO:0006468
Seca10g01880 1607 ProSiteProfiles Protein kinase domain profile. 512 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01880 1607 FunFam FERONIA receptor-like kinase 241 417 - -
Seca10g01880 1607 SUPERFAMILY Protein kinase-like (PK-like) 1274 1559 IPR011009 -
Seca10g01880 1607 Pfam Malectin-like domain 47 415 IPR024788 -
Seca10g01880 1607 Pfam Malectin-like domain 815 1184 IPR024788 -
Seca10g01880 1607 FunFam FERONIA receptor-like kinase 812 967 - -
Seca10g01880 1607 FunFam receptor-like protein kinase FERONIA 1264 1366 - -
Seca10g01880 1607 CDD STKc_IRAK 518 790 - -
Seca10g01880 1607 FunFam receptor-like protein kinase FERONIA 477 589 - -
Seca10g01880 1607 FunFam FERONIA receptor-like kinase 995 1186 - -
Seca10g01880 1607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1413 1425 IPR008271 GO:0004672|GO:0006468
Seca10g01880 1607 ProSitePatterns Protein kinases ATP-binding region signature. 1296 1319 IPR017441 GO:0005524
Seca10g01880 1607 Gene3D Phosphorylase Kinase; domain 1 474 589 - -
Seca10g01880 1607 SMART serkin_6 512 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01880 1607 SMART serkin_6 1290 1562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01880 1607 PANTHER OS03G0124300 PROTEIN-RELATED 803 1246 IPR046957 GO:0004672
Seca10g01880 1607 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Seca10g01880 1607 ProSiteProfiles Protein kinase domain profile. 1290 1562 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01880 Seca-Chr10 20900064 20906257 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01880 40 834 Receptor kinase-like Gene Family AT3G51550 43.862 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Seca10g01880 Malectin_like 4.6e-34 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01880 - - gmx:100776859 1247.65