Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01877 ATGGGCATCCTCTGTTCTTGTTTAAAAGCGAGGGAACCTGAAGAAACTGTTGCTCTTGGGGGTGAAGTGATCGGCACCTATTCTCGTTTCTATTCTCATGCACGTGATCAATCACAATCATCTGATGATGAGGATGCCTGTCCTACATGTTTTGAAGGGTCTTATTTTTCTGTGACAGAATATACTGACGAAAATCCTAAGATAATTGCAAAGTGCAATCACCATTACCACCTTGGTTGTATATATGAATGGAAGGAGAGAAGTGAAACCTGTCCAACTTGTAGACAGGTATGCAACATATAA 303 0.4059 MGILCSCLKAREPEETVALGGEVIGTYSRFYSHARDQSQSSDDEDACPTCFEGSYFSVTEYTDENPKIIAKCNHHYHLGCIYEWKERSETCPTCRQVCNI. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01877 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 100 IPR013083 -
Seca10g01877 100 SUPERFAMILY RING/U-box 41 98 - -
Seca10g01877 100 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 97 - -
Seca10g01877 100 SMART ring_2 47 94 IPR001841 -
Seca10g01877 100 Pfam RING-H2 zinc finger domain 48 95 IPR024766 GO:0008270
Seca10g01877 100 ProSiteProfiles Zinc finger RING-type profile. 47 95 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01877 Seca-Chr10 20875075 20875838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01877 40 97 C3H Transcription Factor Family AT5G15790 62.069 6.21e-21 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01877 - - pvu:PHAVU_003G039100g 103.99