Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01875 ATGGGAAGGGGTAGGGTACAGTTGAAGAGGATAGAGAACAAGATCAATCGCCAGGTAACTTTCTCCAAAAGGAGAGCTGGATTGCTTAAGAAGGCTCATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGATTGTCTTCTCCCACAAAGGAAAGCTCTTTGAGTATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCTACGAAAGGTATAATTATGCAGAGAGACAGCTAGCAGCAAATGATTCTGAGACACAGGAAAACTGGACCATTGAGTATAGTAGGCTTAAGGCAAAGATAGACCTTTTGCAGAGAAACCACAGGCACTATATGGGAGAAGATTTGTCTTCAATGAGCCTCAAAGAACTTCAGTGTCTGGAGCAGCAGTTAGATACTTCTCTCAAGAATATCCGTACTCGCAGAAACCAAGTGATGTACGAGTCAATTTCTGAGCTTCAGAAAAAGGAGAAAGGGATACAAGAGCAGAATAACATGCTCGCAAAGAAGATAAAAGAGAAAGAGAAGGCAATGGCACAGCAGGCTGCTCAATGGGAGGAGCCAAACTACAGGGTTGATACATCTTTCTTACTACAGGACCCCCTTCCCACTTTGAACATTGGTGGCAATTACCGTCAGGAAGCACCAGAACTGGGGAGGAATGAGCTTGACCTGACCCTGGAACCACTCTATTCATGCCAGCGTGGATGCTTTTGA 720 0.45 MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERYERYNYAERQLAANDSETQENWTIEYSRLKAKIDLLQRNHRHYMGEDLSSMSLKELQCLEQQLDTSLKNIRTRRNQVMYESISELQKKEKGIQEQNNMLAKKIKEKEKAMAQQAAQWEEPNYRVDTSFLLQDPLPTLNIGGNYRQEAPELGRNELDLTLEPLYSCQRGCF. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01875 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Seca10g01875 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 166 - -
Seca10g01875 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 Coils Coil 151 185 - -
Seca10g01875 239 Coils Coil 88 108 - -
Seca10g01875 239 Pfam K-box region 84 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g01875 239 FunFam Floral homeotic protein APETALA 1 13 68 - -
Seca10g01875 239 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Seca10g01875 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 SUPERFAMILY SRF-like 2 93 IPR036879 GO:0003677|GO:0046983
Seca10g01875 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g01875 239 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01875 Seca-Chr10 20858320 20862723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01875 1 239 MADS-box Gene Family AT1G26310 62.205 8.08e-105 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca10g01875 K-box 1.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01875 K09264 - gmx:100810129 389.808