Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01872 ATGGGTAGGGGAAAGGTGGAGCTGAAGAGGATTGAAAACAAGATAAACCGTCAAGTCACATTTGCAAAGAGAAGGAATGGTTTGCTCAAGAAAGCTTATGAACTCTCTGTCCTCTGCGATGCTGAGGTTGCCCTCATCATCTTCTCCACCCGTGGCAAGCTCTATGAGTTCTGCAGCACCAATAGCATGGCCAAGACACTTGAACGATATCAAAGATGCAGTTATGGAGCCTTGGAAGTAAACCACCAACCTGAAATGGAGACACAGAGGCGCTACCAAGAGTATCTTAAGCTGAAATCAAAAGTGGAGGCACTACAGAAAACGCAGAGAAACCTTCTTGGGGAAGAATTGGAGCACTTAGATATGAAGGATCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCCTTGAAGCAAATAAGGTCTAACAAGGTATGCAAATTAAATTTGAAATCTGTGATGAACTAA 465 0.4387 MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCSTNSMAKTLERYQRCSYGALEVNHQPEMETQRRYQEYLKLKSKVEALQKTQRNLLGEELEHLDMKDLEQLERQLDSSLKQIRSNKVCKLNLKSVMN. 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01872 154 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 142 - -
Seca10g01872 154 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Seca10g01872 154 ProSiteProfiles K-box domain profile. 88 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g01872 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 FunFam MADS-box transcription factor 1 13 103 - -
Seca10g01872 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 Pfam K-box region 86 144 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca10g01872 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca10g01872 154 Coils Coil 122 142 - -
Seca10g01872 154 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Seca10g01872 154 SUPERFAMILY SRF-like 2 87 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01872 Seca-Chr10 20829815 20835986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01872 1 140 MADS-box Gene Family AT3G02310 76.429 7.57e-75 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca10g01872 K-box 3.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01872 K09264 - gmx:100811049 265.388