Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01870 ATGGAATCTTGGAGTTACGTCCCTGAAGAGAAAGGCTATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTATGAGAAATAGAAAAGCATTGGTTGAATGGGACAACAAATCCTTCAGTAACTTTGAGAGAGATGGATTTAATTCAGACAGAGAGGTAGTTAAAAGCATGGAATTTGTGGACTTGGGATTTCCTGACTTGTTGCAAAAGTCTTTTCATGGTGGCCAGCCTATGGAGACATCCAGCTGTGAGCTAGACAGTAATTCTAGTAAAAGAGGGAATTCATCCACCCATGTTATTGCTTTAGATTCATCTTTGGGGGAGGAAGAATCTGAGTCAAAGCATCTAAGTTCTCTAATTGAATCCAAAATTCATGACCCTTCACTGATTGATCTGAAGCTAGGGAGATTAGCAGATTGTAAAGGTGCAAGCAGTGATAAAGATGCAAAAGAAAGATTCACTTTAACATCTATACATCCAACCACGCTTGCAAAGAGAGCTCGCACTTCCAGTTTACCTGCTCAGGCTCCTGTGTGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAGGATTATCACAAAAGACATAAAGTTTGTGATGTTCACTCCAAGACAGCTAAAGTTATTGTTAATGGCATTGAGCAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGCTAGCTGAATTTGATGATGGTAAGCGCAGTTGTCGCAGGCGTCTAGCCGGACACAATGAACGCCGAAGAAAACCTCAGTTTGATTACATGACTGGTAAACAACACAAGATTCTTCAGTCATATCAAGCAGGTACCAAGTATCTGGGGTCTTCATTACAGAAACCCCAGTTTGCCTTTCAAGATGTATTTCAAAGTGGCATCCTTTTCCCAGGAAAGCATGATCAAGTCTATCAGAGTGGACACATCAAATTGGAAGATGAATCAATTTGCAGTTCTCAACTAGCAGCACCCATCACAGTTGGTCAGGAGTTAACTAGCTGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGAATCCATCACACCACTCAGCAGAAAATCCATTAGCCAGTTCTCTTATCTTCCAGGGCATCTGCATGAACGACAGAGATGACCAAGTCTCTGAAACACCTTTGAGGATAAGTTCTGTAGATAAATATGTGCCAAATGAGTCTTTTCCATGTGGGATAGACTCTAAGGAAGTTATCAAGAACAGATCCACAACACTTTCTGATGCTGGTCTGGCTCTTCAAGTACACAGAGATGATATTTGCCAACCATCAGAATCATTCAATGTCAAATATCGTCTTCCCTCTGAACACGGAGCCACTGTTGATCTATTTCAATTGTCTTCTCATCTTCAGAGGGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAATGGGAAGATGAGGACTGCTGTTTCCCAACTGTGTAA 1443 0.4123 MESWSYVPEEKGYLFSDEMDFSLDAFMRNRKALVEWDNKSFSNFERDGFNSDREVVKSMEFVDLGFPDLLQKSFHGGQPMETSSCELDSNSSKRGNSSTHVIALDSSLGEEESESKHLSSLIESKIHDPSLIDLKLGRLADCKGASSDKDAKERFTLTSIHPTTLAKRARTSSLPAQAPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTGKQHKILQSYQAGTKYLGSSLQKPQFAFQDVFQSGILFPGKHDQVYQSGHIKLEDESICSSQLAAPITVGQELTSCALSLLSAQSQNPSHHSAENPLASSLIFQGICMNDRDDQVSETPLRISSVDKYVPNESFPCGIDSKEVIKNRSTTLSDAGLALQVHRDDICQPSESFNVKYRLPSEHGATVDLFQLSSHLQRVEQQRNSVLVKWEDEDCCFPTV. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01870 480 SUPERFAMILY SBT domain 179 260 IPR036893 GO:0003677|GO:0005634
Seca10g01870 480 ProSiteProfiles Zinc finger SBP-type profile. 178 255 IPR004333 GO:0003677
Seca10g01870 480 FunFam Squamosa promoter-binding-like protein 14 172 242 - -
Seca10g01870 480 Gene3D - 172 242 IPR036893 GO:0003677|GO:0005634
Seca10g01870 480 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 101 361 IPR044817 GO:0003677
Seca10g01870 480 Pfam SBP domain 181 254 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01870 Seca-Chr10 20780944 20786835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01870 1 478 SBP-box Gene Family AT1G69170 34.714 9.23e-63 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca10g01870 SBP 1.1e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01870 - - gsj:114387713 760.37