Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01867 ATGAACCACCAGCATGAGGAGAAAGTCACCATGGACCTTGTTCCACCATCTGAGCATCTCTGCTACGTCCGTTGCAACTTCTGTAACACTGTTCTCGCTGTTGGCATCCCATGCAAGAGGCTGCTAGACACTGTGACAGTCAAGTGCGGTCACTGCAGCAACCTCTCCTTTCTCAGCACCAGACCTCCTCCTTCTAATTCTCAGAATCAAAACCAAACCATTGATCACACCCTCACTCTCCAGGGGTTTTACAGTAGTACTAATAGTGATGGGAAAAAGGGGCAAGCATCATCTTCATCTTACTCATCACCAACTACATCCACCGACTCTGTCTCCCCTAAGCCACCACCATTTGTTGTTAAACCACCTGAGAAGAAGCACCGTCTCCCATCTGCTTACAACCGCTTCATGAAAGAGGAGATCCAGCGCATCAAAACAGCGAACCCTCAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCCAAAAATTGGGCTAGGTTCATTCCAAATTCTCCAACCACTTCAGTTTCTGCAACTAAAAATAATATTGAATGA 555 0.4721 MNHQHEEKVTMDLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPPSNSQNQNQTIDHTLTLQGFYSSTNSDGKKGQASSSSYSSPTTSTDSVSPKPPPFVVKPPEKKHRLPSAYNRFMKEEIQRIKTANPQIPHREAFSAAAKNWARFIPNSPTTSVSATKNNIE. 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01867 184 PANTHER PROTEIN YABBY 6-RELATED 16 175 IPR006780 GO:0007275
Seca10g01867 184 MobiDBLite consensus disorder prediction 83 113 - -
Seca10g01867 184 MobiDBLite consensus disorder prediction 83 129 - -
Seca10g01867 184 CDD HMG-box_SF 128 164 - -
Seca10g01867 184 SUPERFAMILY HMG-box 110 165 IPR036910 -
Seca10g01867 184 FunFam protein CRABS CLAW isoform X3 119 179 - -
Seca10g01867 184 Gene3D High mobility group box domain 110 171 IPR036910 -
Seca10g01867 184 Pfam YABBY protein 16 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01867 Seca-Chr10 20750024 20751592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01867 6 183 C2C2-YABBY Transcription Factor Family AT1G69180 61.878 9.10e-65 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca10g01867 YABBY 1.7e-57 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01867 K25796 - gmx:100819079 287.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01867 10 20750024 20751592 Seca10g01867 10 20750024 20751592 ECH