Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01863 ATGCTGAGCACGAGGCAATCCTTCTACATCTCTTCCTCTTCCTCTTCTCCTTCTTCTTCTTCCTTGTTTTGTATCATTCTCCTCCAAGCTTCTCTTCTCTTTGGCCTTGCCTTCTCTGCTAACCATGAAGCCTCAACTCTCTTCTCCTGGCTCCATAGTTCTACATCACCACCCCCTCCATCTTTCGCTAATTGGAACATCCTTGATACCAATCCATGCAACTGGACCTCCATAACATGCTCCTTCCAAGGCTTTGTCACTGAAATCAACATCCAATCCATCCCACTTGAGCTTCCCATACCTTCCAATATCTCTTCATTTCACTCTCTTAACAAGCTTGTCATTTCTGGTGCCAATCTCACTGGAACCATCCCTGTTGACATTGGTGATTGCCCTGCCCTCACTGTTATTGACCTGAGCTCCAACAATCTTGTTGGTTCTATTCCTGCAAGTATCGGCAAGCTAAAGAATCTGGAGAACTTGTCTTTGAACTCCAACCAGCTTACTGGAAAAATCCCAGATGAGATAGGCAACTGCATTGGCCTCAAAAGTTTAGTCCTTTTTGATAATCAGCTAGGTGGGGCTATCCCACCTGTGGTAGGGAAGTTGTCAAAACTTGAGGTCCTTAGAGCAGGAGGGAACAAGGATATTGTTGGGAAGATCCCTGAAGAGCTTAGAGAATGCAGCAACTTGACAGTGTTGGGGCTGGCTGATACCAGAATATCTGGTTCTTTGCCTGCTTCTTTGGGTAGGCTTAGCAAGCTTCAGACTTTGTCAATCTATACTACTATGCTATCTGGTGAAATTCCACCAGAGTTAGGTAACTGTTCTGAACTTGTTGACTTATTCCTATATGAAAATAGCCTATCAGGGTCTATTCCATCTGAGCTTGGTAAGCTCCAAAATCTGCAACAGTTGTTTTTATGGCAGAATAGTCTTGTAGGGGCTATCCCAGAAGAGATTGGTAACTGTTCAAGCTTGAGAAACATTGATCTCTCTTTGAATTCTCTATCTGGAACTATACCTTTGTCTTTTGGAGGTCTTTTAGAACTTGAAGAGTTTATGATTAGTGATAATAATGTATCTGGTTCAATACCATCCAGTCTTTCAAATTGTAAAAAGCTTCAGCAATTGCAAGTTGACACAAATCAGCTCTCAGGCTTGATTCCACCAGAGCTTGGGCAGTTGTCAAATCTCATAGTGTTCTTTGCTTGGCAGAACCAGCTTGAAGGAAGCATTCCTTCCACTTTGGGAAACTGTAGTAACCTCCAAGCACTAGACTTGTCTCGCAATGCACTCACTGGTAGCATTCCTGCTACCCTATTTCAGCTCCAAAACCTCACAAAACTGCTTCTCATTTCCAATGATATATCAGGTTTTATACCATCAGAAATAGGCAGTTGCAGTTCTTTAATAAGGTTGAGGCTTGGAAACAATAGGATTACTGGCAGCATTCCTAAGACAATAGGCAGTCTCAAGAGCTTGAATTTTTTAGATCTCTCTGGGAACCGCCTCTCCGGGCCAGTGCCTGATGAGATTAGAAGCTGCACAGAATTGCAAATGATAGACTTCAATAGTAACAACTTAGAAGGCCCACTTCCTAATTCCTTGTCATCACTATCCGCCCTTCAGGTGTTGGATGCATCTTCTAACAAGTTTTCAGGTCCTATACCAGCAAGTTTGGGCCGTCTTGTTTCTCTAAGCAAGTTAATCCTAGGCAATAACTTATTCTCTGGACCAATTCCTGCATCACTTAGCCTATGTTCAAATCTCCAACTGCTTGATCTCAGCAGCAATCAGCTCAGTGGAAGCATATCAGCTGAGCTGGGCCGTATTGAGTCTCTAGAAATTGCTCTTAATCTTAGTTGCAATTCACTCAGTGGGACAATCCCAGCTCAGATATCTTCTCTTAACAAGCTTTCCATACTTGACCTTTCACATAACCAGTTGGAAGGAGATTTGCAACCTCTTGCAGAGCTAGATAACCTTGTCTCCCTCAATGTTTCTTACAACAAATTCACTGGCTATCTTCCAGATAACAAGCTTTTCAGGCAGTTATCATCAAAAGACCTCACTGGAAATCAAGGGCTTTGCACTTCAGGTCAGGAGTCATGCTTTGTAAAGGATTCTGGCAAGACTGGTGTGGCATTGAATGGAAATGAAGTAAGGAAGTCGCGAAGGATTAAGCTAGCCATTGGATTGCTTATAGCCTTAACAGTAATAATGATAGTAATGGGGATAACTGCTGTGATCAAAGCAAGAAGAACCATTAAAGATGATGATTCAGAATTAGGGGACTCATGGCCATGGCAATTCATACCATTCCAGAAGCTAAATTTCTCAGTGGAACAAGTCCTGAGATGCTTAGTTGATAGAAATATAATTGGGAAGGGATGTTCTGGTGTTGTTTACCGAGCTGAAATGGATAATGGTGAAGTCATTGCTGTGAAGAAATTGTGGCCTACAACAATTGAAGCAGGAGATGCATTTAAGGATGATAAAAGTGGAGTTCGTGACTCATTCTCAGCTGAGGTGAAGACCCTTGGCTCAATCCGTCATAAGAACATTGTCAGATTCTTGGGTTGTTGTTGGAACAGAAAAACAAGATTGCTTATTTTCGATTATATGCCAAATGGAAGTTTAAGCAGTCTACTTCATGAGAGGACTGGAAATTCACTGGAATGGGAACTTAGGTACCGAATCTTGTTAGGTGCTGCAGAAGGCCTTGCATATCTACATCATGACTGTGTTCCTCCTATAGTCCACAGAGATATTAAAGCCAATAACATCCTCATTGGCCTTGAATTTGAACCTTACATTGCTGACTTTGGCTTGGCTAAGCTTGTTGATGATGGTGATTTTGGTCGTTCTTCCAATACAGTTGCTGGTTCCTATGGATATATTGCTCCAGAATATGGCTATATGATGAAGATCACAGAGAAGAGTGATGTTTACAGCTATGGAATAGTTTTGTTAGAAGTCTTGACAGGAAAGCAACCAATTGATCCAACTATACCAGATGGACTACATGTTGTTGATTGGGTGAGACAGAAAAGGGGTCTTGAAGTACTTGATCCTAGCTTACTCTCTAGACCAGAATCAGAAATAGAGGAAATGATGCAGGCATTGGGCATAGCCTTATTGTGTGTGAATTCATCCCCTGATGAAAGGCCAACAATGAGAGATATAGCTGCAATGCTGAAGGAGATAAAGCATGAAAGGGAGGAATATGCAAAGTTTGATGTGCTTCTAAAGGGGTCTCCTGCAAATGATGCATGTGGCAATAAAAGCTCTGGTGGAGTTCCAGCAACATCTTCATCAGTATCTGTCATGCAAACTTTGAACACAAGAAGCAACAACACAAGCTTCTCTGTGTCTTCACTGCTTCATTCATCTTCAAGTTCCAAGCTGGGTTTCAAATGA 3423 0.4201 MLSTRQSFYISSSSSSPSSSSLFCIILLQASLLFGLAFSANHEASTLFSWLHSSTSPPPPSFANWNILDTNPCNWTSITCSFQGFVTEINIQSIPLELPIPSNISSFHSLNKLVISGANLTGTIPVDIGDCPALTVIDLSSNNLVGSIPASIGKLKNLENLSLNSNQLTGKIPDEIGNCIGLKSLVLFDNQLGGAIPPVVGKLSKLEVLRAGGNKDIVGKIPEELRECSNLTVLGLADTRISGSLPASLGRLSKLQTLSIYTTMLSGEIPPELGNCSELVDLFLYENSLSGSIPSELGKLQNLQQLFLWQNSLVGAIPEEIGNCSSLRNIDLSLNSLSGTIPLSFGGLLELEEFMISDNNVSGSIPSSLSNCKKLQQLQVDTNQLSGLIPPELGQLSNLIVFFAWQNQLEGSIPSTLGNCSNLQALDLSRNALTGSIPATLFQLQNLTKLLLISNDISGFIPSEIGSCSSLIRLRLGNNRITGSIPKTIGSLKSLNFLDLSGNRLSGPVPDEIRSCTELQMIDFNSNNLEGPLPNSLSSLSALQVLDASSNKFSGPIPASLGRLVSLSKLILGNNLFSGPIPASLSLCSNLQLLDLSSNQLSGSISAELGRIESLEIALNLSCNSLSGTIPAQISSLNKLSILDLSHNQLEGDLQPLAELDNLVSLNVSYNKFTGYLPDNKLFRQLSSKDLTGNQGLCTSGQESCFVKDSGKTGVALNGNEVRKSRRIKLAIGLLIALTVIMIVMGITAVIKARRTIKDDDSELGDSWPWQFIPFQKLNFSVEQVLRCLVDRNIIGKGCSGVVYRAEMDNGEVIAVKKLWPTTIEAGDAFKDDKSGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRKTRLLIFDYMPNGSLSSLLHERTGNSLEWELRYRILLGAAEGLAYLHHDCVPPIVHRDIKANNILIGLEFEPYIADFGLAKLVDDGDFGRSSNTVAGSYGYIAPEYGYMMKITEKSDVYSYGIVLLEVLTGKQPIDPTIPDGLHVVDWVRQKRGLEVLDPSLLSRPESEIEEMMQALGIALLCVNSSPDERPTMRDIAAMLKEIKHEREEYAKFDVLLKGSPANDACGNKSSGGVPATSSSVSVMQTLNTRSNNTSFSVSSLLHSSSSSKLGFK. 1141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01863 1140 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 214 438 - -
Seca10g01863 1140 SMART LRR_typ_2 540 564 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 155 179 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 420 444 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 660 685 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 492 516 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 348 372 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 637 656 IPR003591 -
Seca10g01863 1140 SMART LRR_typ_2 300 324 IPR003591 -
Seca10g01863 1140 SUPERFAMILY Protein kinase-like (PK-like) 767 1068 IPR011009 -
Seca10g01863 1140 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 40 200 - -
Seca10g01863 1140 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 876 1085 - -
Seca10g01863 1140 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 439 533 - -
Seca10g01863 1140 Pfam Protein tyrosine and serine/threonine kinase 793 1066 IPR001245 GO:0004672|GO:0006468
Seca10g01863 1140 SMART serkin_6 789 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01863 1140 ProSitePatterns Protein kinases ATP-binding region signature. 795 818 IPR017441 GO:0005524
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 533 617 IPR032675 -
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 340 435 IPR032675 -
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 241 339 IPR032675 -
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 153 240 IPR032675 -
Seca10g01863 1140 Pfam Leucine rich repeat 326 385 IPR001611 GO:0005515
Seca10g01863 1140 Pfam Leucine rich repeat 446 505 IPR001611 GO:0005515
Seca10g01863 1140 Pfam Leucine rich repeat 132 192 IPR001611 GO:0005515
Seca10g01863 1140 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 296 1069 - -
Seca10g01863 1140 SUPERFAMILY RNI-like 113 458 - -
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 42 152 IPR032675 -
Seca10g01863 1140 FunFam LRR receptor-like serine/threonine-protein kinase 538 613 - -
Seca10g01863 1140 FunFam Putative LRR receptor-like serine/threonine-protein kinase 618 703 - -
Seca10g01863 1140 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Seca10g01863 1140 ProSitePatterns Serine/Threonine protein kinases active-site signature. 920 932 IPR008271 GO:0004672|GO:0006468
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 436 532 IPR032675 -
Seca10g01863 1140 ProSiteProfiles Protein kinase domain profile. 789 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01863 1140 ProSiteProfiles Leucine-rich repeat profile. 639 661 IPR001611 GO:0005515
Seca10g01863 1140 SUPERFAMILY RNI-like 364 695 - -
Seca10g01863 1140 Gene3D Ribonuclease Inhibitor 618 706 IPR032675 -
Seca10g01863 1140 Gene3D Transferase(Phosphotransferase) domain 1 876 1085 - -
Seca10g01863 1140 Gene3D Phosphorylase Kinase; domain 1 775 875 - -
Seca10g01863 1140 PRINTS Leucine-rich repeat signature 591 604 - -
Seca10g01863 1140 PRINTS Leucine-rich repeat signature 637 650 - -
Seca10g01863 1140 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 772 875 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01863 Seca-Chr10 20677675 20681777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01863 38 1086 Receptor kinase-like Gene Family AT5G56040 48.684 0.0 987
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca10g01863 PK_Tyr_Ser-Thr 9e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01863 - - gmx:100818541 1861.27