Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01856 ATGGCGATGATGCAAGGGGTGCAGAAGAACACGCTGTACGTGGGAGGGTTAGCGGAGGAGGTGAACGAGTCCATCCTTCACGCGGCGTTCATACCGTTCGGTGACATCAAGGACGTAAAGACGCCGTTGGATCAGGCCACGCAGAAGCACCGCTCCTTCGGCTTCGTCACCTTCCTCGAGAGAGAAGACGCCTCCGCCGCCATGGACAACATGGACGGCGCTGAGCTCTACGGCCGCGTCCTCACCGTCAATTACGCCCTCCCTGAACGCATCAAAGGTGGCGAGCAAGGATGGGCCGCTCAACCAATTTGGGCGGATGCGGATACATGGTTTGAGCGGCAGCAGCAAGAGGAGGAAATGCGTCGACTTGAGGCAGAGAGTCGAGCTGCAATGCAGGCTGCAGAAGAGTTGCGCAGGAAACAAGCAGCTCAAGAGCGAGAAGGAGAGAAAGAAGAGGAAATTGAGATCAAGGATGATCCTATGGCAAAGGCTGAAGCAGAGGTTCTTCAACAGAATAACCAATAA 525 0.5562 MAMMQGVQKNTLYVGGLAEEVNESILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEREDASAAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMRRLEAESRAAMQAAEELRRKQAAQEREGEKEEEIEIKDDPMAKAEAEVLQQNNQ. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01856 174 Coils Coil 113 154 - -
Seca10g01856 174 Gene3D - 3 152 IPR012677 -
Seca10g01856 174 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Seca10g01856 174 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Seca10g01856 174 CDD RRM_PPIE 12 86 IPR034168 GO:0003723
Seca10g01856 174 FunFam Peptidyl-prolyl cis-trans isomerase 2 155 - -
Seca10g01856 174 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 88 IPR000504 GO:0003723
Seca10g01856 174 PANTHER ATPASE E1 2 173 - -
Seca10g01856 174 SMART rrm1_1 11 84 IPR000504 GO:0003723
Seca10g01856 174 MobiDBLite consensus disorder prediction 119 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01856 Seca-Chr10 20605675 20607401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01856 10 88 Eukaryotic Initiation Factors Gene Family AT3G11400 37.975 2.71e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01856 - - ccaj:109797476 299.671