Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01850 ATGGATCGGAACTCTCTCTCTCCCCGAACCTGGAAAACCCGACCCAAATCTGATATATACTCCACCTTCGTGGTCCATGACGACGATGACGACGACGGTGACGGCGAAATCAATCGGCGGCGGAAAGCCGGAAGCGCAGAAACACAGGACGATCCATATGCGACAATGGTATACAAAGGCAACGGCCTCGACGACGATGAAGACTCCTCCCTCCCTCCTCTCCTCAAGCGCCTCCCCAAGGATTTCGGCGGCGGAGCGCCACTGGACTACGACGACGACGAAGATAATGATGCCGGCGATTTCGGTACCGTGATTGTGAAGACCGATCGGAGCCGGCAGCGCGATCGGTCTTCTTCTTCGGGCTTTGCTTCACCGGCGGGCTCGACCTGGAAGTCTCGGAGTTCTTCTCAGGCGAGTCCTTTGAACTGGTTCGGTAGCGGCGATGATGAACATGATGGCGACGACGATGATGGCGGGTTTTCAACCTTCGTCGTGCGTTCGACGGTGAGGTCCGGCGAGAGGGAGTCGGTAAGTGGAACCGTGGTGCGGCGGACAGGCGGCGGCGGCGGCAGTTCGACGATGGAGAGGGCGGTGGCGAGCATGCAGGCTGTGGGAGAGTTTGGATTGGGGAAGCAGAGGAAGGGAAGTGGATCCTCGCAGAATGAGGAGGGGAAGCAGCAATCGATAACGACCAAGGTTTCGTCGAGTTCGATCCCTGAGAGTGTTACCAGAGAGGACCCTACCACCAAGTACGAATTGCTCAATGAACTTGGGAAGGGGTCCTATGGAGCTGTTTACAAAGCAAGGGATTTAAGAACCTCGGAGATGGTTGCTATCAAAGTCATATCATTATCTGAAGGGGAGGAGGGGTATGAGGAAATCCGTGGTGAGATTGAGATGTTACAACAATGTAATCATCCGAATGTTGTCCGTTACCTTGGAAGTTATCAAGGAGAGGAGTATCTTTGGATAGTGATGGAATACTGTGGTGGTGGTAGTGTAGCTGATCTGATGAACGTGACTGATGAACCACTGGATGAAGGTCAAATAGCATATATCTGTAGAGAAGCACTGAAGGGACTTGAATATTTGCACTCAATTTTTAAAGTCCATAGAGACATTAAAGGTGGGAATATCTTATTAACTGAACAAGGAGATGTCAAGCTAGGGGATTTTGGTGTTGCTGCGCAGCTTACAAGGACTATGTCAAAGCGCAATACGTTCATTGGAACTCCTCATTGGATGGCTCCGGAAGTCATTCAGGAAAGTCGCTATGATGGGAAGGTAGATGTTTGGGCTCTTGGTGTGTCTGCAATTGAAATGGCCGAGGGTGTTCCTCCAAGATCGTCAGTGCATCCTATGAGGGTTTTATTCATGATATCCATCGAACCAGCTCCAATGCTTGAGGATAAAGAAAAATGGTCTCTATATTTCCATGATTTTGTTGCAAAGTGCCTGACCAAAGAACCTCGTCTCCGCCCTCCTGCAGCTGAGATGTTGAAGCACAAATTCTTTGAAAAATGGAAAACCGGATCTGCTGCAATGATGCCAAAACTAGAAAAGGCAAGGCAAATCAGGGCTTCAATGGCTTTGCAGGCACAAACTCTTCCTCCAGGTGCATCAGAAGACCAGCAGCCCATGTTAGATTCAAAGCTAAATGATGAATATGGAGATACTGTTCCATCCAGACCTAATAACATAGGCGCTGAGGGCGCTACTGATCTCTCATCGCATGGCACTATGAGGAAGTTGCATAAGGTGGAAGATGTGGACACAAGTGAAGGCAACTTTGGCACTGTAATAGTCCATGGAGATGAATTACATAAGACCACACAGGATGCAGATTCTGCAGTTTCCTTGTCTACGCTCCCCAGTGGCACAGGAGTCAGATTATCTGACCCTAGGGTTGACAGTCTAAAAGTTGGTGATGTGAACAATGCCTCTTTTAGAGGATCTAGTCCTACTACAGATACCATACAATCGTCTTTACCTTATGTTAGTAATTCCACTGAGCTGAACCTCAGAAGAGAAGGTAGCCATCGAGGAGCACACACTGGAATTGGTAGTCATATAAGCAATAGCACATTGAAGAGTGAAACAGTCAGCCGCAAAGCATTTGCTTTACAAGATAAGCTATGGTCCATTTATGCTGCTGGTAATACAGTGCCCATACCATTCTTAAGGGCGACAGATATATCACCTATTGCTCTCCTTTCAGACAATGTGCTTGGTGGCATACAACAGGATACCAGTGGAACTGGAACACTAGAAGCATTGCAAGAGCTTTTTAGTGGTGATGGACAGTCCAAAAAGGGTCGGAGAGGACTAAATGAGGTGACTGTGTGTGTATGCCAACCACATATTTTAGTGTGTCGTGCACTTCTTACAATCTCTTATACTGGTTTGCTAATTGACATGCAGCAGATGCCGCTTCCTCCAAGCATTTACCAAAGATTGACATCAAGTTCTACTCTAATGAATTTGGCACAGGCTTTAGCTTACCATAAGATGTGTTACGAAGATATGCCACTGCAGGAACTACAAGCAACCCAGGAGCAGCGGACTATTCAAAATCTCTCTGATACACTTCGTACAATTCTTCGGTTGTAG 2610 0.4782 MDRNSLSPRTWKTRPKSDIYSTFVVHDDDDDDGDGEINRRRKAGSAETQDDPYATMVYKGNGLDDDEDSSLPPLLKRLPKDFGGGAPLDYDDDEDNDAGDFGTVIVKTDRSRQRDRSSSSGFASPAGSTWKSRSSSQASPLNWFGSGDDEHDGDDDDGGFSTFVVRSTVRSGERESVSGTVVRRTGGGGGSSTMERAVASMQAVGEFGLGKQRKGSGSSQNEEGKQQSITTKVSSSSIPESVTREDPTTKYELLNELGKGSYGAVYKARDLRTSEMVAIKVISLSEGEEGYEEIRGEIEMLQQCNHPNVVRYLGSYQGEEYLWIVMEYCGGGSVADLMNVTDEPLDEGQIAYICREALKGLEYLHSIFKVHRDIKGGNILLTEQGDVKLGDFGVAAQLTRTMSKRNTFIGTPHWMAPEVIQESRYDGKVDVWALGVSAIEMAEGVPPRSSVHPMRVLFMISIEPAPMLEDKEKWSLYFHDFVAKCLTKEPRLRPPAAEMLKHKFFEKWKTGSAAMMPKLEKARQIRASMALQAQTLPPGASEDQQPMLDSKLNDEYGDTVPSRPNNIGAEGATDLSSHGTMRKLHKVEDVDTSEGNFGTVIVHGDELHKTTQDADSAVSLSTLPSGTGVRLSDPRVDSLKVGDVNNASFRGSSPTTDTIQSSLPYVSNSTELNLRREGSHRGAHTGIGSHISNSTLKSETVSRKAFALQDKLWSIYAAGNTVPIPFLRATDISPIALLSDNVLGGIQQDTSGTGTLEALQELFSGDGQSKKGRRGLNEVTVCVCQPHILVCRALLTISYTGLLIDMQQMPLPPSIYQRLTSSSTLMNLAQALAYHKMCYEDMPLQELQATQEQRTIQNLSDTLRTILRL. 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01850 869 MobiDBLite consensus disorder prediction 33 47 - -
Seca10g01850 869 ProSitePatterns Protein kinases ATP-binding region signature. 257 280 IPR017441 GO:0005524
Seca10g01850 869 MobiDBLite consensus disorder prediction 213 244 - -
Seca10g01850 869 MobiDBLite consensus disorder prediction 117 143 - -
Seca10g01850 869 ProSiteProfiles Protein kinase domain profile. 251 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01850 869 MobiDBLite consensus disorder prediction 22 193 - -
Seca10g01850 869 FunFam Aurora kinase A 243 332 - -
Seca10g01850 869 MobiDBLite consensus disorder prediction 209 249 - -
Seca10g01850 869 FunFam serine/threonine-protein kinase dst1 isoform X1 248 538 - -
Seca10g01850 869 SUPERFAMILY Protein kinase-like (PK-like) 248 506 IPR011009 -
Seca10g01850 869 SMART serkin_6 251 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01850 869 PANTHER SERINE/THREONINE-PROTEIN KINASE TAO 233 551 - -
Seca10g01850 869 Pfam Protein kinase domain 251 505 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01850 869 Gene3D Transferase(Phosphotransferase) domain 1 247 537 - -
Seca10g01850 869 CDD STKc_MAP4K3_like 250 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01850 Seca-Chr10 20533260 20546358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01850 1 869 MAP Kinase Kinase Kinase Kinase AT1G69220 59.076 0.0 860
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Pl Seca10g01850 Pkinase 5.4e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01850 - - gmx:100804995 1313.52