Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01836 ATGGCCAAAAAAGTTTTCAGCTTTCTTCTTCCTCACAGGGTATTCTCCTCCACACCTGAAATTCCCAGCCTTTACTCCTTCCTTCAGCCTTCAGTGTTTGCCCTCAACAGGAACAGGAAGCAATCCGGTTTTGAAGAACCCCAAAAGCTCCCAACTTGCCCACCACAGTCCCTCTCCCTGACCTCTGATCAAGTTGCCACCCTCCAAACCACCCTTCACAAGTCCCTCATCACCAGTGACACTGATGAGGCTTGGAAGTCCTTTAAGGCCCTCACCACCCACCAAGCCTTCCCACCTAAGCCCCTCACCAATTCCCTCATCACCCACTTGTCCTCCCTTGGTGACACTCACAATCTCAAGAGGGCTTTTGCCTCTGTGGTCTATCTCATGGAGAGGAACCCAATGGTGCTGGAGTTTCAAACAATTCATGCCATGCTTGATTCCATGAGGTGTGCCAACACTGCTGCCCCTGCTTTTGCCCTTGTCAGGTGCATGTTCAAAAACAGGTTTTTTATCCCTTTTGGTGTGTGGGGCAATGTGCTTGTTGAGATTAGCCGGAAGAATGGTAACCTTGCTGCTTTCTTACCTGTTTTTGAAGAGAACTGTAAGGTTGCTTTGGATGAGAAGTTGGAGTTCTTGAAACCTGATGTTGCTGCCTGTAATGCAGCACTGGAAGGTTGCTGTTGTGAGCTTGAATCAGTGACTGATGCTGAGAGAGTTGTTACAACAATGTCAAATCTGGGTGTTAGACCAGATGAACTGAGTTTTGGATTTCTTGGTTATTTATATGCTCTGAAGGGGCTACAAGAAAAGATAGATGAGTTAGAAGTTTTGATGAATGGGTTTGGTTACTCAAACAAGAAGGGTTTCTATTCTAATTTGATCAGTGGGTATGTTAAGTCAGGCAATTTAGCTTCTGTGGAGTCAACTATTCTCAGTAGTTTGAATGAGGGAGTGGGGGAAGATTGGAGTTTTGGTGGAGAAACATTCTGTGCTGTAGTTAAGGAATATATTCAGAAGGGAAATATCAAGGGTTTAGCTAATTTGATTATTGAAACTCAGAAGTTAGAGCCTTCAAATATCAAAGTTGATAAGTCTATAGGTTATGGTATTGTTAATGCATGTGTTAGTATTGGACTATCAGACAAAGCACACAGCATTCTTGATGAAATGAATGCTCTGGGAGGCTCTGTGGGTCTTGGGGTCTATGTACCAATCTTGAAGGCTTACTGCAAAGAAAATCGAACAGCTGAGGCTACTCAGTTGGTAATGGATATTAGTAGTTCAGGTCTTCAGTTGGATGTGGAAACCTATGATACTCTGATAGAAACATCCATGTCCAGCCAAGATTTTCAGTCAGCATTCTCCCTTTTTAGGGACATGAGAGAGGCAAGGATTCCTGACTTGAAAGGAAGTTACTTAACTATAATGACAGGTTTGATGGAGAATCATCGACCAGAGTTGATGGCAGCTTACATAGATGAGGTGGTTGAGGATCCTCGAATTGAAGTAGGTACTCATGATTGGAATTCTATCATTCATGCTTTCTGTAAAGCTGGGAGACTAGAAGATGCAAGAAGGACTGTCAGGAGGATGGTGTTCCTGCAATTTGAGCCAAATGATCAGACATACTTGTCCCTGATTAATGGATATGTCTTGGCAGAGAAATATTTTAATGTGCTGATGTTGTGGAATGAGGTTAAGCGAAAGCTATCAGGGGATGGACAGAAAGGGATCAAATTTGACCATAATCTGGTTGATGCATTCTTGTATGCTTTGGTCAAGGGCGGTTTCTTTGATGCTGTTATGCAAGTTGTGGAAAAATCTAGTGAGATGAAAATATTTGTTGATAAGTGGAGATACAAGCAAGCATTCATGGAGACCCATAAAAAGCTCAAAGTGGCAAAGTTAAGAAAAAGAAATTTCCGAAAAATGGAAGCACTTATTGCTTTCAAGAATTGGGCTGGATTAAATGCATGA 1980 0.4253 MAKKVFSFLLPHRVFSSTPEIPSLYSFLQPSVFALNRNRKQSGFEEPQKLPTCPPQSLSLTSDQVATLQTTLHKSLITSDTDEAWKSFKALTTHQAFPPKPLTNSLITHLSSLGDTHNLKRAFASVVYLMERNPMVLEFQTIHAMLDSMRCANTAAPAFALVRCMFKNRFFIPFGVWGNVLVEISRKNGNLAAFLPVFEENCKVALDEKLEFLKPDVAACNAALEGCCCELESVTDAERVVTTMSNLGVRPDELSFGFLGYLYALKGLQEKIDELEVLMNGFGYSNKKGFYSNLISGYVKSGNLASVESTILSSLNEGVGEDWSFGGETFCAVVKEYIQKGNIKGLANLIIETQKLEPSNIKVDKSIGYGIVNACVSIGLSDKAHSILDEMNALGGSVGLGVYVPILKAYCKENRTAEATQLVMDISSSGLQLDVETYDTLIETSMSSQDFQSAFSLFRDMREARIPDLKGSYLTIMTGLMENHRPELMAAYIDEVVEDPRIEVGTHDWNSIIHAFCKAGRLEDARRTVRRMVFLQFEPNDQTYLSLINGYVLAEKYFNVLMLWNEVKRKLSGDGQKGIKFDHNLVDAFLYALVKGGFFDAVMQVVEKSSEMKIFVDKWRYKQAFMETHKKLKVAKLRKRNFRKMEALIAFKNWAGLNA. 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01836 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 216 251 IPR002885 -
Seca10g01836 659 Pfam PPR repeat family 509 551 IPR002885 -
Seca10g01836 659 Gene3D Tetratricopeptide repeat domain 65 356 IPR011990 GO:0005515
Seca10g01836 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 505 539 IPR002885 -
Seca10g01836 659 NCBIfam pentatricopeptide repeat 509 540 IPR002885 -
Seca10g01836 659 Gene3D Tetratricopeptide repeat domain 472 656 IPR011990 GO:0005515
Seca10g01836 659 Pfam PPR repeat 291 309 IPR002885 -
Seca10g01836 659 Pfam PPR repeat 372 393 IPR002885 -
Seca10g01836 659 PANTHER BNAC05G43320D PROTEIN 15 658 - -
Seca10g01836 659 Gene3D Tetratricopeptide repeat domain 400 468 IPR011990 GO:0005515
Seca10g01836 659 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 434 468 IPR002885 -
Seca10g01836 659 Pfam Pentatricopeptide repeat domain 422 466 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01836 Seca-Chr10 20315153 20320139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01836 213 611 Glycosyltransferase AT1G05670 20.297 2.93e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01836 - - gmx:100811600 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01836 10 20315153 20320139 Seca10g01836 10 20315153 20320139 ECH