Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01819 ATGTATCAAGCTTTGTCTGTTATTATCAGGATGCTGCAGTCAGGAAATGAATCTCTCCCTGATGATGAATCATATGACTTGGTCATTGGAATGCTCTTTTCGACAGACCAGATTGATGCTGCATTCAAGTATATAGATTTAACTTTGAAATCCGGTTACATGTTGTCATCGAAGGTATTCATGGACTGTGTGAGGAGTTGTGTCAATAAGGGAAGGCTTGATACATTGGTGACAGTAATTGAAAGGTGCAGGGCAACAGATCAAAACAAAGCTCTTTGCCCAGCCTGGAACATGTGCAACTTTATAGCTGAAATTGCAATTCGAGAGGATAATAGCAAGTTAGCTTTTTATGGCCTGGAGTTTATGGCTAGATGGATTGTAAAGGGAGAACGTGCAAGACCCCCTGTATTGCTTTCTGTAGATGAAGGTTTAGTTTTGTCAGCTCTTTTGACTGCAGGTAGAACCTATAATTCTGAGCTTCTAGGTGCAGCATGGGCTGTTTTGGACCGCTCATTACGTAAAAAGAAAGTTCCGAATCCAGAATCATATCTAGGAAAGATATATGCCCTTGCATCATTGGGGAATCTACAAAAGGCTTTTGGTACTCTGCATGAATATGAGGCTGCTTATGGAGATTCCAATCAAGAGGCTGAAGACTTGTTCTGCCCATTTACTTCTTTACATCCATTGGTTGTAGCATGCTCCAAGAAGGGTTTTGAGACTTTGGATACCGTTTATTTTCAACTGGAGAATTTAAGCCGTGCGGAACGTCCTTATAAATCTGTTGCTGCACTAAACTGCGTCATTTTAGGATGTGCAAACATATGGGACCTTGAACGAGCTTACCAAACTTTTGAATCAATTGGATCTGCTTTTGGGTTGACCCCTGATATTCATTCATTCAATGGGCTTATGTATGCCTTTGGGAAGCTCAAGAAGACACATGAAGCTACAAGCGTGTTTGAGCACCTAGTGAGTTTGGGTCTCAAACCTAATGCAAGATCATATTCTCTGCTTGTTGATGCCCACCTGATTAACCGGGATGTCAAATCGGCTCTGGCAGTGATTGATAATATGATGGCTGCTGGATTTGAACCGTCGAAAGAGACACTAAAAAAGGTCAGAAGACGATGCATACGAGAGATGGACTATGAAAGTGATGATCGAGTGCAATCAATTGCCAACTCTCTGAACTACCGAATGCGTTCAGAAGCCCGAAGAGACATGCTGTTTAATCTTGATTACAGTATGGATTATGCTTGA 1263 0.4157 MYQALSVIIRMLQSGNESLPDDESYDLVIGMLFSTDQIDAAFKYIDLTLKSGYMLSSKVFMDCVRSCVNKGRLDTLVTVIERCRATDQNKALCPAWNMCNFIAEIAIREDNSKLAFYGLEFMARWIVKGERARPPVLLSVDEGLVLSALLTAGRTYNSELLGAAWAVLDRSLRKKKVPNPESYLGKIYALASLGNLQKAFGTLHEYEAAYGDSNQEAEDLFCPFTSLHPLVVACSKKGFETLDTVYFQLENLSRAERPYKSVAALNCVILGCANIWDLERAYQTFESIGSAFGLTPDIHSFNGLMYAFGKLKKTHEATSVFEHLVSLGLKPNARSYSLLVDAHLINRDVKSALAVIDNMMAAGFEPSKETLKKVRRRCIREMDYESDDRVQSIANSLNYRMRSEARRDMLFNLDYSMDYA. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01819 420 PANTHER OS07G0599000 PROTEIN 4 419 IPR044605 -
Seca10g01819 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 332 366 IPR002885 -
Seca10g01819 420 Gene3D Tetratricopeptide repeat domain 1 115 IPR011990 GO:0005515
Seca10g01819 420 Gene3D Tetratricopeptide repeat domain 143 409 IPR011990 GO:0005515
Seca10g01819 420 Pfam PPR repeat 300 329 IPR002885 -
Seca10g01819 420 Pfam PPR repeat 335 364 IPR002885 -
Seca10g01819 420 NCBIfam pentatricopeptide repeat 335 367 IPR002885 -
Seca10g01819 420 NCBIfam pentatricopeptide repeat 300 333 IPR002885 -
Seca10g01819 420 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 297 331 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01819 Seca-Chr10 20103375 20109236 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01819 161 367 Glycosyltransferase AT1G05670 22.967 1.33e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01819 - - lang:109360641 722.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01819 10 20103375 20109236 Seca10g01819 10 20103375 20109236 ECH