Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01774 ATGTCGGACGAGGAGCACCACTTCGAGTCCAAGGCTGATGCCGGTGCATCCAAGACATACCCGCAGCAAGCTGGAACAATCCGCAAAAACGGTTACATTGTCATCAAGAACAGACCCTGCAAGGTTGTGGAGGTTTCAACTTCCAAAACTGGCAAGCATGGACATGCGAAGTGTCACTTTGTTGGTATTGACATCTTCACCGGCAAAAAGCTTGAAGATATTGTTCCCTCTTCCCACAACTGTGATGTCCCTCATGTCAATCGCACTGACTACCAGCTCATCGATATCTCAGAGGATGGATTTGTGAGTCTGCTGACTGAGACTGGTGGTACTAAGGATGACCTTAGACTTCCAACCGATGAAAATCTGCTTTCACAGATCAAGGATGGATTTGCTGAAGGTAAAGATCTTGTTGTGTCTGTTATGTCTGCCATGGGTGAGGAGCAGATTTGTGCCCTTAAGGACATTGGCCCCAAGTAA 480 0.4729 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFVGIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGGTKDDLRLPTDENLLSQIKDGFAEGKDLVVSVMSAMGEEQICALKDIGPK. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01774 159 SMART eIF_5a_2 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca10g01774 159 FunFam Eukaryotic translation initiation factor 5A 1 85 - -
Seca10g01774 159 CDD S1_eIF5A 86 156 - -
Seca10g01774 159 PIRSF Transl_init_eIF5A 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca10g01774 159 FunFam Eukaryotic translation initiation factor 5A 86 158 - -
Seca10g01774 159 Gene3D - 86 158 IPR012340 -
Seca10g01774 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 154 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca10g01774 159 MobiDBLite consensus disorder prediction 1 21 - -
Seca10g01774 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Seca10g01774 159 NCBIfam translation initiation factor IF-5A 17 153 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca10g01774 159 SUPERFAMILY Nucleic acid-binding proteins 86 156 IPR012340 -
Seca10g01774 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
Seca10g01774 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 157 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Seca10g01774 159 Gene3D - 1 85 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01774 Seca-Chr10 19646034 19647657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01774 1 159 Eukaryotic Initiation Factors Gene Family AT1G13950 89.308 1.40e-103 291
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01774 K03263 K02180 tcc:18604761 321.242