Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01769 ATGATGGGTATAGATGGCGAAAATATGGGCAGAAAGTTGTCAAAGGCAACCCTTATCCTAGGTTGTAATGTCCGGAAGCATGTAGAGAGAGCTTCAACAGATCCTAAAGCTGTCATAACAACATATGAAGGGAAACATAATCATGATGTGCCAGCAGCTAAGACTAACAGCCACACTATTGCTAACAATAGTGCATCACAGTTAAGATCACAAAATACCATACCTGAGATGCATAGTTTCAGCAGCAGAGGTATTGGGGGCAATGAGCAACAGCCTGTTGCACGTCTAAGGCTGAAGGAAGAGCAGATAACCTAA 315 0.4286 MMGIDGENMGRKLSKATLILGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNSASQLRSQNTIPEMHSFSSRGIGGNEQQPVARLRLKEEQIT. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01769 104 SMART WRKY_cls 10 50 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g01769 104 MobiDBLite consensus disorder prediction 64 104 - -
Seca10g01769 104 MobiDBLite consensus disorder prediction 64 88 - -
Seca10g01769 104 ProSiteProfiles WRKY domain profile. 1 51 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca10g01769 104 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 21 73 IPR044810 GO:0003700
Seca10g01769 104 Gene3D WRKY domain 3 52 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g01769 104 SUPERFAMILY WRKY DNA-binding domain 20 51 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca10g01769 104 Pfam WRKY DNA -binding domain 15 49 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01769 Seca-Chr10 19607057 19607816 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01769 4 104 WRKY Transcription Factor Family AT2G03340 57.426 2.93e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca10g01769 WRKY 8.3e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01769 - - gmx:100799335 154.836