Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01764 ATGGAAGAGACAGAGGAGTCAACCAATGCTAATCAGAAATTCACTACCAAAAGAAGAAGCTTCAGGAATGGAGCCAACTCTCATGAACATCATCACTATCAGCACCATCAGTTGCTACAATACTCAACTCAGCTTGGGTTCTGCAACAACCAGAACAAGTATCAGAGGTACTACCCAGCTCTTCTTCCTCTACCTTCTCTTATACCTCTCCAACAACTACCTTTGACTCCACCCTTCCCTCAAAACCAGACCATCAAATCAAAAACCCATTTGCAGAAACCTCCATGCAAACTCAATAGTTCTCCTTCCTCTGATTACAAGCTCTCTGAACCACCACTTGCTCCTGATTCAGCTCCAAAGGAACTTCAGCAGCAAACAAAGGCATCCTTTAACGGAGGTGATGGTAAGAAACTGATTCCACCAAGGAAGCCACAGGCAGCAATTGTTGCAAGGAGGCCAGACTCTGGTGGCAAAGAAGGTTCTGTGATCTCTCTCCTTGCCAACCACTTTTTGGTGCAATTTGATCCATCACAAAAAATATATCATTACAATGTTGAAATCACTCCTCATCCCTCCAAGGATATTGCTAGAGTAATCAAACAGAATTTGGTAAATAACAATTCTGCTGTACTCTCGGGTGCTATTCCGGCATATGATGGGAGGAAGAATCTTTACAGCTCAATTGAATTCCAAAATGATAAGCTTGAGTTCTACATAAGCCTCCCAATCCCCACTAGCAAATTGACATCACCATATGGAGAAATGTATGACTTGAAAGAGAAGCATGAACAGCTTAAACTGTTCCGGATAAATATCAAACTAGTCTCAAAGATTAATGGGAAGGAATTGAATAACTACTTGAGCAAAGAGGGTGATGACTGGATTCCACTTCCACAGGATTATCTACATGCTTTGGATGTAGTTCTGAGGGAAAGTCCAACAGAGAAATGTATACCTGTAGGGAGGTCATTCTATTCAAGTTCAATGGGAAGAAGCAAAGATATTGGTGGAGGAGCTGTTGGATTGAGAGGCTTCTTTCAGAGTCTTAGACCAACACAACAAGGACTTGCTCTCAATGTGGATTTCTCAGTAACTGCTTTCCATGAGAGCATAGGAGTCATTCCATACTTGCAGAAACGTCTTGAGTTTCTTCGAGACCTTTCTCAAAGGAAGACAACTCAATTAACTGGTGAAGAAAGGAAGGAAGTGGAGAAGGCATTGAAGAACATAAGGGTCTTTGTTTGCCATAGAGAAACTGTTCAGAGATACCGTGTCTATGGCTTAACAGAGGAGACTACTGAAAATCTTTGGTTTGCTGACAGAGATGGCAAGAATCTGAGGCTTGTGAATTACTTTAAAGATCACTATAACTATGACATACAATTCAGGAAATTGCCATGCTTGCAAATTAGTAGGAGTAAACCTTGTTATCTCCCTATGGAGCTATGTGTGATCTGTGAAGGCCAGAAATTCCTTGGGAGATTGTCTGATGATCAGACAGCAAGAATACTCAAGATGGGCTGCCAAAGACCAGGAGAACGAAAAACCATCATTGAAGGAGTCGTGAGAGGAACTGTTGGGCCTACAAGTGGTGACCAGGAAAGAGAATTCAAACTCCAAGTCTCTAGAGAAATGACAAGGTTGACTGGGAGAATTCTTCACCCTCCTAAACTAAAGCTTGGAGATGGAGGTCATGTGAGAAACCTGACTCCTTCACGTCATGACCGTCAGTGGAACCTTCTGGATGGCCATGTTGTTGAAGGAGCTACAATTGAAAGGTGGGCACTAATAAGCTTTGGTGGCACACCTGAGCAGAAGTCCAATATCCCCAGATTCATAAACCAGTTATCTCAAAGGTGTGAACAATTGGGTATTTTTCTTAATAAGAACACAGTTATTAGTCCCCAGTTTGAGTCAAGCCAGGTTCTTAACAATGTCACCCTTTTGGAATCTAAGCTCAAGAGAATCCAGAGGACTGCCTCAAACAATCTCCAGCTTCTTATTTGTATAATGGAGAGAAAACACAAAGGGTATGCAGACTTGAAACGAATTGCTGAGACAAGTGTTGGTGTTGTAAGCCAATGCTGCCTGTACCCAAATCTCAGCAAGTTAAGTTCACAATTTTTGGCTAATTTAGCCCTCAAAATCAATGCCAAAGTTGGTGGATGCACAGTTGCTTTGTACAACTCACTGCCTTCTCAAGTACCAAGGCTCTTTCGGATTGATGAGCCAGTGATATTCATGGGAGCTGATGTGACACATCCTCATCCTCTTGATGATTCCAGTCCTTCTGTTGCTGCTGTTGTTGGTAGCATGAATTGGCCTACAGCAAATAAATACATTTCAAGAATAAGGTCTCAAACACATAGACAAGAAATTATCCAGGATCTTGGTGCAATGGTAGGGGAATTGCTTGATGATTTTTATCAGGAAGTAGAGAAACTCCCCAACAGAATAATTTTCTTCAGAGATGGGGTTAGTGAAACTCAATTTTATAAAGTGCTGGAAGAGGAACTGCAATCCATAAGGCATGCATGTTCAAGGTTTCCTGGTTATAAGCCTTTCATTACTTTTGCAGTTGTGCAGAAGAGGCATCACACAAGGTTGTTTCCCTTTGAAACTGACCAATCTTCCCCACAAAACCATTTCTTATATGAAAATATTCCTCCAGGGACAGTGGTTGATTCTGTGATTACTCATCCAAAGGAATTTGATTTCTATCTCTGTAGCCATTGGGGTGTGAAAGGAACAAGCAGGCCAACTCATTACCATGTCTTGTGGGATGAAAACCAGTTTACTTCTGATGAACTGCAAAAACTGGTTTACAATTTATGCTATACTTTTGTTAGGTGTACCAAGCCAATATCTTTGGTGCCTCCTGCATATTATGCCCATTTAGCTGCATACAGAGGCAGACTCTACCTTGAGCGATCAGAGTCCTTAGGTTTGTTCAGAAGTTCATCTACATTATCCAGAGCTGCTCCTCCAAAGACAGCACCTCTACCTAAACTTAGTGAAAACATCAAGAAACTCATGTTCTACTGCTAG 3048 0.4167 MEETEESTNANQKFTTKRRSFRNGANSHEHHHYQHHQLLQYSTQLGFCNNQNKYQRYYPALLPLPSLIPLQQLPLTPPFPQNQTIKSKTHLQKPPCKLNSSPSSDYKLSEPPLAPDSAPKELQQQTKASFNGGDGKKLIPPRKPQAAIVARRPDSGGKEGSVISLLANHFLVQFDPSQKIYHYNVEITPHPSKDIARVIKQNLVNNNSAVLSGAIPAYDGRKNLYSSIEFQNDKLEFYISLPIPTSKLTSPYGEMYDLKEKHEQLKLFRINIKLVSKINGKELNNYLSKEGDDWIPLPQDYLHALDVVLRESPTEKCIPVGRSFYSSSMGRSKDIGGGAVGLRGFFQSLRPTQQGLALNVDFSVTAFHESIGVIPYLQKRLEFLRDLSQRKTTQLTGEERKEVEKALKNIRVFVCHRETVQRYRVYGLTEETTENLWFADRDGKNLRLVNYFKDHYNYDIQFRKLPCLQISRSKPCYLPMELCVICEGQKFLGRLSDDQTARILKMGCQRPGERKTIIEGVVRGTVGPTSGDQEREFKLQVSREMTRLTGRILHPPKLKLGDGGHVRNLTPSRHDRQWNLLDGHVVEGATIERWALISFGGTPEQKSNIPRFINQLSQRCEQLGIFLNKNTVISPQFESSQVLNNVTLLESKLKRIQRTASNNLQLLICIMERKHKGYADLKRIAETSVGVVSQCCLYPNLSKLSSQFLANLALKINAKVGGCTVALYNSLPSQVPRLFRIDEPVIFMGADVTHPHPLDDSSPSVAAVVGSMNWPTANKYISRIRSQTHRQEIIQDLGAMVGELLDDFYQEVEKLPNRIIFFRDGVSETQFYKVLEEELQSIRHACSRFPGYKPFITFAVVQKRHHTRLFPFETDQSSPQNHFLYENIPPGTVVDSVITHPKEFDFYLCSHWGVKGTSRPTHYHVLWDENQFTSDELQKLVYNLCYTFVRCTKPISLVPPAYYAHLAAYRGRLYLERSESLGLFRSSSTLSRAAPPKTAPLPKLSENIKKLMFYC. 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01764 1015 ProSiteProfiles PAZ domain profile. 378 487 IPR003100 GO:0005515
Seca10g01764 1015 FunFam protein argonaute 10-like 736 1015 - -
Seca10g01764 1015 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 142 978 - -
Seca10g01764 1015 SMART PAZ_2_a_3 378 509 IPR003100 GO:0005515
Seca10g01764 1015 CDD PAZ_argonaute_like 374 486 - -
Seca10g01764 1015 FunFam Argonaute 10 552 728 - -
Seca10g01764 1015 SUPERFAMILY Ribonuclease H-like 651 976 IPR012337 -
Seca10g01764 1015 SUPERFAMILY PAZ domain 365 523 IPR036085 GO:0005515
Seca10g01764 1015 SMART DUF1785_2 318 370 IPR014811 -
Seca10g01764 1015 Pfam N-terminal domain of argonaute 163 309 IPR032474 -
Seca10g01764 1015 Gene3D - 552 728 - -
Seca10g01764 1015 Pfam PAZ domain 381 503 IPR003100 GO:0005515
Seca10g01764 1015 ProSiteProfiles Piwi domain profile. 666 976 IPR003165 GO:0003676
Seca10g01764 1015 MobiDBLite consensus disorder prediction 79 137 - -
Seca10g01764 1015 Gene3D - 738 1015 IPR036397 GO:0003676
Seca10g01764 1015 SMART Piwi_a_2 666 976 IPR003165 GO:0003676
Seca10g01764 1015 CDD Piwi_ago-like 535 975 IPR045246 -
Seca10g01764 1015 FunFam Protein argonaute 7 365 491 - -
Seca10g01764 1015 Pfam Piwi domain 667 973 IPR003165 GO:0003676
Seca10g01764 1015 MobiDBLite consensus disorder prediction 79 107 - -
Seca10g01764 1015 Gene3D paz domain 364 491 - -
Seca10g01764 1015 Pfam Argonaute linker 1 domain 319 368 IPR014811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01764 Seca-Chr10 19521439 19526727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01764 157 1015 Eukaryotic Initiation Factors Gene Family AT1G48410 42.140 0.0 646
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01764 K11593 - gmx:100797755 1888.62