LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g01760	ATGAGCAGCGGCAGTTCGTCCGGCGGCAGCGGAACGAAGAAGGAGAAGGAGAAGGCGAGGGTGAGCCGTACGTCACTAATACTATGGCATGCGCACCAGAACGACTCTGCGGGGGTGCGGAAGCTACTGGAGGAGGATCCGTCGCTGGTGAATGCGAGGGATTACGACAACCGCACACCGCTCCACGTGGCTTCTCTCCACGGCTGGCTCGATGTCGCCAAGTGCTTGATTGAATTCGGTGCTGACGTCAATGCCCAGGATCGTTGGAAAAACACTCCTCTGGCAGATGCAGAAGGAGCTAAACGAACTGCGATAATTGAGCTTTTGAAATCACATGGAGGCTTGTCTTATGGCCAAAATGGAAGCCATTTTGAACCAAAGCCTGTTCAACCCCCATTGCCTAACAAGTGTGATTGGGAAGTTGACCCTTCTGAGCTGGACTTCTCAAATTCAGTTTGTATTGGAAAGGTATTTACTACATTTTCTGGATGTCAGTGCCATTGTATCATATCAAGATCTTACAAACGAGTTTTAAAACTTGCTCTCTATTGTGGCCAACTGTTTATTGTGAAGAGTTGGTTTGGTCTTTATTGTGGATGTATTTTCTTGAAGGGATCTTTTGGTGAGATTTTAAGAGCCCATTGGCGTGGAACACCTGTTGCTGTCAAACGCATTCTTCCATCTCTATCAGATGATAGAATGGTGATTCAAGACTTCAGGCAAGAGGTTAATTTACTTGTGAAGCTTCGCCACCCTAATGTTGTTCAGTTTCTTGGAGCTGTTACTGACAGGAAGCCCCTTATGTTAATTACTGAGTATCTAAGAGGAGGTGATCTTCATAGATACCTCAAGGATAAAGGTTCACTTAATCCTTCTACAGCTATCAACTTTGCCTTGGGCATTGCCAGAGGGATGGCCTATCTTCACAATGAACCAAATGTTATAATTCATCGAGACCTAAAGCCAAGGAATGTTCTTTTAGTCAATTTTAATGCTGACCATTTGAAAGTTGGAGATTTTGGATTAAGTAAGCTTATTAAAGTCCAAAGTTCTCATGATGTATACAAGATGACGGGTGAAACTGGAAGCTACCGCTATATGGCTCCTGAAGTTTTCAAACACCGGAGATATGATAAGAAGGTTGACGTGTTCTCCTTTGCAATGATTTTGTATGAGATGCTTGAAGGTGAACCACCTTTTGCAAATTATGAACCTTATGATGGAGCCAAATATGTGGCAGAAGGGCATAGGCCTACTTTTCGGGCAAAGGGTTATATCCCTGAACTACGAGAGTTAACAGACGTGTGTTGGGCTGGTGACATGAATCAAAGACCTTCCTTCATAGAGATCCTTAAACGACTTGAAAGGATCAAGGAAAATTTACCTTCAGATCATCACTGGAGCTTATTCGCTTCATAA	1419	0.4383	MSSGSSSGGSGTKKEKEKARVSRTSLILWHAHQNDSAGVRKLLEEDPSLVNARDYDNRTPLHVASLHGWLDVAKCLIEFGADVNAQDRWKNTPLADAEGAKRTAIIELLKSHGGLSYGQNGSHFEPKPVQPPLPNKCDWEVDPSELDFSNSVCIGKVFTTFSGCQCHCIISRSYKRVLKLALYCGQLFIVKSWFGLYCGCIFLKGSFGEILRAHWRGTPVAVKRILPSLSDDRMVIQDFRQEVNLLVKLRHPNVVQFLGAVTDRKPLMLITEYLRGGDLHRYLKDKGSLNPSTAINFALGIARGMAYLHNEPNVIIHRDLKPRNVLLVNFNADHLKVGDFGLSKLIKVQSSHDVYKMTGETGSYRYMAPEVFKHRRYDKKVDVFSFAMILYEMLEGEPPFANYEPYDGAKYVAEGHRPTFRAKGYIPELRELTDVCWAGDMNQRPSFIEILKRLERIKENLPSDHHWSLFAS.	473

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g01760	472	FunFam	serine/threonine-protein kinase STY46-like	198	275	-	-
	Seca10g01760	472	FunFam	Integrin-linked protein kinase family	275	470	-	-
	Seca10g01760	472	ProSiteProfiles	Ankyrin repeat profile.	56	88	IPR002110	GO:0005515
	Seca10g01760	472	SUPERFAMILY	Protein kinase-like (PK-like)	204	467	IPR011009	-
	Seca10g01760	472	Gene3D	-	3	123	IPR036770	-
	Seca10g01760	472	SMART	serkin_6	196	457	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g01760	472	Gene3D	Phosphorylase Kinase; domain 1	196	275	-	-
	Seca10g01760	472	SUPERFAMILY	Ankyrin repeat	27	114	IPR036770	-
	Seca10g01760	472	PIRSF	ILK	196	472	-	-
	Seca10g01760	472	PIRSF	ILK	1	165	-	-
	Seca10g01760	472	ProSiteProfiles	Protein kinase domain profile.	196	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca10g01760	472	CDD	STKc_MAP3K-like	204	454	-	-
	Seca10g01760	472	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	155	459	-	-
	Seca10g01760	472	Gene3D	Transferase(Phosphotransferase) domain 1	276	467	-	-
	Seca10g01760	472	Pfam	Ankyrin repeats (many copies)	42	94	IPR002110	GO:0005515
	Seca10g01760	472	ProSiteProfiles	Ankyrin repeat region circular profile.	56	88	-	-
	Seca10g01760	472	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	315	327	IPR008271	GO:0004672\|GO:0006468
	Seca10g01760	472	Pfam	Protein tyrosine and serine/threonine kinase	204	454	IPR001245	GO:0004672\|GO:0006468
	Seca10g01760	472	SMART	ANK_2a	56	85	IPR002110	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g01760	Seca-Chr10	19452924	19460109	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g01760	2	472	MAP Kinase Kinase Kinase	AT1G14000	74.310	0.0	707

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Seca10g01760		PK_Tyr_Ser-Thr	6e-60	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g01760	-		-	gmx:100789273	762.681