Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01755 ATGAAAATGAGGTGTGAGAAGGTAGGGTTGAAGAAAGGGGCATGGACTGCGGAAGAAGACGAGAAGCTTGTTTCTTATATTAAACAACATGGCCATGGAAACTGGTCTTCATTGCCCGCTAGAGCTGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATCAATTATCTCAGACCTGACATAAAACGAGGAAACTTCACCTCTGAAGAAGACCGTACTATTGTTCAACTCCATGCCCTTCTCGGAAACAAATGGTCAATAATAGCAGGTCAGTTACCAAAAAGAACAGACAATGAGATAAAGAACTATTGGAATACTCACATCAAGAAAAGGCTTGTTAGAATGGGCATAGATCCCATTACCCACAAAAGATCTTCATCAAAATTAGGAGGCATGATGAACCTCCACATGGCTCAATGGGAGAATGCACGACTCCAAGCTGAAGCCAGACAATCCCTAATCATAAACAAAATCCCAACTACTAATTCTACTCCTCCTAAACCTTCATTAGGTGAAAGTAATAATAATATGATGATGGATGACTTTGTGTCAAAGTCAAAGTTGCAAGATGATGACATCATGGTGGTCGTGGAAGCATATATTTAG 612 0.4052 MKMRCEKVGLKKGAWTAEEDEKLVSYIKQHGHGNWSSLPARAGLERCGKSCRLRWINYLRPDIKRGNFTSEEDRTIVQLHALLGNKWSIIAGQLPKRTDNEIKNYWNTHIKKRLVRMGIDPITHKRSSSKLGGMMNLHMAQWENARLQAEARQSLIINKIPTTNSTPPKPSLGESNNNMMMDDFVSKSKLQDDDIMVVVEAYI. 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01755 203 Pfam Myb-like DNA-binding domain 65 109 IPR001005 -
Seca10g01755 203 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Seca10g01755 203 FunFam MYB-related transcription factor 11 64 - -
Seca10g01755 203 SMART sant 11 61 IPR001005 -
Seca10g01755 203 SMART sant 64 112 IPR001005 -
Seca10g01755 203 FunFam MYB transcription factor 66 127 - -
Seca10g01755 203 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Seca10g01755 203 Gene3D - 11 64 - -
Seca10g01755 203 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Seca10g01755 203 CDD SANT 67 110 IPR001005 -
Seca10g01755 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Seca10g01755 203 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 169 - -
Seca10g01755 203 CDD SANT 14 59 IPR001005 -
Seca10g01755 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Seca10g01755 203 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Seca10g01755 203 Gene3D - 66 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01755 Seca-Chr10 19388208 19389272 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01755 5 152 MYB Transcription Factor Family AT3G01140 69.872 1.60e-78 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01755 Myb_DNA-binding 1.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01755 K09422 - gmx:100792464 250.751