Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01752 ATGGAGGGCAAAACAAGCTCTGATCTCCCACCTGGCTTCAGGTTTCATCCAACTGATGAGGAACTAATTGTGTACTACCTTTGTAACCAAGCCACATCACAACCATGCCCTGCATCTATCATCCCAGAAGTGGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAATCAGACTTTGGAGAAAATGAATGGTATTTCTTTAGTCCAAGAGAGAGGAAATATCCAAATGGGGTGAGGCCTAACAGAGCAACTGTGTCAGGGTATTGGAAGGCTACTGGAACAGACAAAGCAATCTATAGTGGGTCTAAGCATATTGGGGTGAAGAAAGCTTTGGTTTTTTACAAAGGTAGGCCACCAAAGGGCTTAAAGACAGATTGGATTATGCATGAGTATAGATTAATTGGATCAAGAAGACAAGCCAACAAACAAATTGGGTCCATGAGACTGGATGACTGGGTCCTGTGTAGGATCTACAAGAAGAAGAACATAGGGAAATCACTAGAGGAAAAAGAGGAGTACCCAACAGCACAAATCAATGTGACAGCAGCAAATGAGGAGAGTGAACAAGGAATGATGAAATTTCCAAGGACATGTTCCCTTACTAATCTTTTGGAAATGGATTACTTGGGTCCAATATCACATATATTATCTGATGGATCATATAATTCAACCTTTGAATTTCAAATGAACACTGCACATGGTGGAATTGACCCCTTTGTAAAATCACAGCTGAGTGAAATGCCTACTAATTATGCAGCAGATTCAGGGAAGTACCAAGTGAAACAGAATACCACTGTCAACCCAACCATATTTCTGAACCAAGTATATGACCATAGAGGATAA 846 0.4031 MEGKTSSDLPPGFRFHPTDEELIVYYLCNQATSQPCPASIIPEVDIYKFDPWELPDKSDFGENEWYFFSPRERKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHIGVKKALVFYKGRPPKGLKTDWIMHEYRLIGSRRQANKQIGSMRLDDWVLCRIYKKKNIGKSLEEKEEYPTAQINVTAANEESEQGMMKFPRTCSLTNLLEMDYLGPISHILSDGSYNSTFEFQMNTAHGGIDPFVKSQLSEMPTNYAADSGKYQVKQNTTVNPTIFLNQVYDHRG. 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01752 281 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 222 - -
Seca10g01752 281 FunFam NAC transcription factor 18 165 - -
Seca10g01752 281 SUPERFAMILY NAC domain 5 161 IPR036093 GO:0003677|GO:0006355
Seca10g01752 281 ProSiteProfiles NAC domain profile. 9 161 IPR003441 GO:0003677|GO:0006355
Seca10g01752 281 Pfam No apical meristem (NAM) protein 10 134 IPR003441 GO:0003677|GO:0006355
Seca10g01752 281 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01752 Seca-Chr10 19342313 19344000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01752 1 216 NAC Transcription Factor Family AT1G69490 69.298 1.29e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g01752 NAM 3.8e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01752 - - gmx:732552 516.924