Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01740 ATGGCTCTCATTGGCTTGCTCTTGGTGTGTTTTCTCACAATGTTCTACTCTGCTTATGGATATGGTGGAGGGTGGGTTGATGCACATGCTACCTTCTATGGAGGAGGTGATGCATCAGGAACAATGGAAAAATCTACCACATTTAATTTTTTTTATTGGAGAATCTTAGAGCAAAATTTGACTAATTTTTTTGGTAATGAAATTTGTACAGGTGGGGCTTGTGGATATGGGAACCTCTACAGCCAAGGGTATGGAACAAACACTGCTGCTCTGAGCACAGCTTTATTCAACAATGGTTTGAGCTGTGGCTCTTGCTTTGAGATAAGGTGTGTGAATGACCGTAGATGGTGCCTTCCTGGTTCCATTGTGGTCACTGCCACTAACTTCTGTCCACCAAACAATGCCTTGCCTAACAATGCAGGAGGGTGGTGCAACCCTCCTCTGCATCACTTTGATCTCGCTCAGCCTGTTTTCCTGCGAATTGCACAATACAAAGCTGGAATTGTGCCTGTGTCTTACAGAAGGGTGCCCTGCAGGAGAAGGGGAGGCATCAGGTTCACCATCAATGGTCATTCCTACTTCAACCTGGTCCTAATCACAAATGTTGGTGGTGCTGGGGATGTTCATGCTGTGGCTATTAAAGGGTCAAGAACTGGATGGATGCCAATGTCAAGGAACTGGGGCCAGAACTGGCAGAGCAACAACTATCTGAATGGCCAAAGCCTGTCTTTCAAGGTCACCACCAGTGATGGCCGTACTGTGGTCTCCTATAATGCTGCCCCAGCTGGATGGTCCTTTGGCCAAACCTACACTGGTGCTCAATTCCGCTAG 831 0.4705 MALIGLLLVCFLTMFYSAYGYGGGWVDAHATFYGGGDASGTMEKSTTFNFFYWRILEQNLTNFFGNEICTGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCFEIRCVNDRRWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPLHHFDLAQPVFLRIAQYKAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHAVAIKGSRTGWMPMSRNWGQNWQSNNYLNGQSLSFKVTTSDGRTVVSYNAAPAGWSFGQTYTGAQFR. 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01740 276 Pfam Lytic transglycolase 88 173 IPR009009 -
Seca10g01740 276 Gene3D - 183 275 IPR036749 -
Seca10g01740 276 Pfam Expansin C-terminal domain 184 261 IPR007117 -
Seca10g01740 276 PRINTS Expansin/Lol pI family signature 258 272 IPR007118 GO:0005576
Seca10g01740 276 PRINTS Expansin/Lol pI family signature 24 39 IPR007118 GO:0005576
Seca10g01740 276 PRINTS Expansin/Lol pI family signature 220 234 IPR007118 GO:0005576
Seca10g01740 276 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 193 272 IPR007117 -
Seca10g01740 276 SUPERFAMILY Barwin-like endoglucanases 8 201 IPR036908 -
Seca10g01740 276 PANTHER EXPANSIN-A15 7 275 IPR002963 GO:0009664
Seca10g01740 276 Gene3D - 13 179 IPR036908 -
Seca10g01740 276 SMART dpbb_1 88 173 IPR007112 -
Seca10g01740 276 FunFam Expansin 183 275 - -
Seca10g01740 276 CDD DPBB_EXPA_N 24 178 - -
Seca10g01740 276 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 71 183 IPR007112 -
Seca10g01740 276 SUPERFAMILY PHL pollen allergen 180 272 IPR036749 -
Seca10g01740 276 PRINTS Expansin signature 229 250 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 83 97 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 110 121 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 158 171 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 122 132 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 141 158 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 258 274 IPR002963 GO:0009664
Seca10g01740 276 PRINTS Expansin signature 182 194 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01740 Seca-Chr10 19234824 19237099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01740 1 276 Expansin Gene Family AT2G03090 75.000 7.58e-151 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01740 - - gmx:100796316 470.7