Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01736 ATGGCCAGCAGCAAGTGTTATATGTTCCCTTCACAAGAAAACCAAAATGTCCTCACCACCTATTACCCTTCTTCTTCTTCTTCTTCATTTCCATCTCATTCTATGGGAATGGTATATACAGACATGGGATCTCTCTCTCTCAGCTCCAACTATGGTGTTGTTTCAACTGTCTCTTCTTCTCAAGAGAGTAACTATGCCTGCAAGACCTCTGTGATGGAAAATAGTAGCAATACTGCAGGATGGACTTTTCCATTTATGAGGGAGTGCCTTTCCAAAAGCTTTGAAGAGCAACATCCCAACATGGATGATGTGGAGGGTTGTAATAATGGTAATTCTGATTGCAGTGATGGGATTGGGGAAAACAACCATAATGCTAACTCCAATGAAGAGAACCCTAATGAGAATCCTGTCAGTGGCAAAGAGGTAGATAGTGGACAATCCAAACTCTGTGCAAGAGGACATTGGAGACCTGCAGAAGATTCCAAGCTCAAGGAACTTGTGGCTCTTTATGGTCCTCAAAACTGGAACCTCATTGCTGAAAAGTTGGAAGGAAGATCAGGTAAGAGTTGTAGGTTGAGATGGTTCAACCAGTTGGACCCAAGGATCAACAGGAGAGCTTTCAGTGAAGAAGAGGAAGAAAGGCTAATGCAGGCACATAGAATTTATGGCAACAAATGGGCCATGATTGCTAGGCTTTTCCCTGGAAGAACAGATAATGCTGTCAAGAATCACTGGCATGTGATAATGGCCAGGAAGTACAGAGAACAATCCAGTGCTTACAGGAGGAGGAGACTGGGCCAATCTGTTTACAGAAGAATGGATCAAAATCCAAACTTTATGATCTGCAGAGAAACCCCAACAACAGAAACAGAACCACCATCACCCTATTTTCTCAATGCAGCACTCAGCAATAATAGTATGGCTATTTTACCATATGCTCCATCCTTCCATGGTGGTGGTGGGGTTGAGTATGGCTTAAATGTTTCAACCTACATGACTGGTGGGAGAGAAGCAATGTCAAGAAATGAGCAGCCCCCCCCACATGTTGGCTTGTATACTCAACAGGCACCATATGATTTCTTCTCTGGTGCAAGAAGCAATGACATGGTGGGAGAGTCTTTGAGTCAGATCAGATGCTGGGACAGGACTAGTGATGATCAATATCATCATCAAGTATCTGGTTTCTACCCTCCTCCTTATTATCCCCAACAATATATGCCAAACAATCACAATTTTTACAGTTACTCAAATTCCTCAGCCAGGGAACCATCATCCGTAGCAGCAGAAAACAGAAACAGAGATAAAGTTGTGATGATCAGTGACCCCTCAGATGCTGTTCCACCTCCATTTTTTGACTTCCTCGGAGTAGGAGCCAAATGA 1380 0.4333 MASSKCYMFPSQENQNVLTTYYPSSSSSSFPSHSMGMVYTDMGSLSLSSNYGVVSTVSSSQESNYACKTSVMENSSNTAGWTFPFMRECLSKSFEEQHPNMDDVEGCNNGNSDCSDGIGENNHNANSNEENPNENPVSGKEVDSGQSKLCARGHWRPAEDSKLKELVALYGPQNWNLIAEKLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLMQAHRIYGNKWAMIARLFPGRTDNAVKNHWHVIMARKYREQSSAYRRRRLGQSVYRRMDQNPNFMICRETPTTETEPPSPYFLNAALSNNSMAILPYAPSFHGGGGVEYGLNVSTYMTGGREAMSRNEQPPPHVGLYTQQAPYDFFSGARSNDMVGESLSQIRCWDRTSDDQYHHQVSGFYPPPYYPQQYMPNNHNFYSYSNSSAREPSSVAAENRNRDKVVMISDPSDAVPPPFFDFLGVGAK. 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01736 459 ProSiteProfiles Myb-like domain profile. 152 198 IPR001005 -
Seca10g01736 459 CDD SANT 155 196 IPR001005 -
Seca10g01736 459 FunFam MYB transcription factor 152 203 - -
Seca10g01736 459 Gene3D - 152 203 - -
Seca10g01736 459 MobiDBLite consensus disorder prediction 104 142 - -
Seca10g01736 459 CDD SANT 206 246 IPR001005 -
Seca10g01736 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 253 IPR017930 -
Seca10g01736 459 Gene3D - 205 271 - -
Seca10g01736 459 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 198 IPR017930 -
Seca10g01736 459 MobiDBLite consensus disorder prediction 101 148 - -
Seca10g01736 459 Pfam Myb-like DNA-binding domain 152 198 IPR001005 -
Seca10g01736 459 Pfam Myb-like DNA-binding domain 204 247 IPR001005 -
Seca10g01736 459 FunFam MYB transcription factor 205 275 - -
Seca10g01736 459 ProSiteProfiles Myb-like domain profile. 199 249 IPR001005 -
Seca10g01736 459 SMART sant 203 251 IPR001005 -
Seca10g01736 459 SMART sant 151 200 IPR001005 -
Seca10g01736 459 PANTHER MYB PROTEIN-RELATED 134 347 - -
Seca10g01736 459 SUPERFAMILY Homeodomain-like 152 245 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01736 Seca-Chr10 19194840 19196644 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01736 95 318 MYB Transcription Factor Family AT1G69560 54.911 2.88e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01736 Myb_DNA-binding 2.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01736 K09422 - vvi:100253313 473.781