Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01729 ATGGCTTCCGAGCCTGATGTCTCTGAGATTTCCTCTCTGTTCGAAAGGCCGGTGAGAAACAGAGACATGTCTCTGTTTTTGCCCTTAATCTTTGGCTTCTCAGACGCTTCTCCTAGGACAGATAGGGAGGAGGACCCAGATCAGGAAACTGAGAGAAATGAAGATTCTCAGCATCAAAGAATCATCTTGGTGAACCCCTTCACACAGGGCATGGTGGTAATTGATGGGGCTTCAAGCCTTGAGGCTCTGTTCCGCGAGCTTGGGAATACCAAGGGTGGTCGACCACCGGCTTCCAAGGAATCCATAGACGCTATGCTGAGTGTTGAAATTGGAGAAAGTGAAGATGGGGAGTGTGTAGTTTGTCTGGAGGAGTTTGAGGTTGGTGGGGTGGTAAAAGAGATGCCTTGTAAGCATAGGTTTCATCAAAATTGCATTGAGAAGTGGCTGGGGATTCATGGGTCTTGCCCTGTTTGCAGGTATGAGATGCCTGTTGATGAGAAAGATGTGGGCAAGAAGAGGGATGAAGAAGGGGGAGAGAGGAGGAGGGTAGGTGGAGAAGTTTGGGTTAGTTTCTCTTTCAATGGAAGTAGGAGAAGCCAGGATCAAAATCAAGCTCCTCCTGCTGATGATTCAAGTGATTCTTCATCAAGTCCTAGCGGTGATGCTGCTGAGGTAGAGAATTGA 684 0.481 MASEPDVSEISSLFERPVRNRDMSLFLPLIFGFSDASPRTDREEDPDQETERNEDSQHQRIILVNPFTQGMVVIDGASSLEALFRELGNTKGGRPPASKESIDAMLSVEIGESEDGECVVCLEEFEVGGVVKEMPCKHRFHQNCIEKWLGIHGSCPVCRYEMPVDEKDVGKKRDEEGGERRRVGGEVWVSFSFNGSRRSQDQNQAPPADDSSDSSSSPSGDAAEVEN. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01729 227 FunFam E3 ubiquitin-protein ligase RNF181 86 165 - -
Seca10g01729 227 Pfam Ring finger domain 117 159 IPR001841 -
Seca10g01729 227 MobiDBLite consensus disorder prediction 193 227 - -
Seca10g01729 227 MobiDBLite consensus disorder prediction 37 57 - -
Seca10g01729 227 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 163 - -
Seca10g01729 227 SMART ring_2 118 158 IPR001841 -
Seca10g01729 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 165 IPR013083 -
Seca10g01729 227 SUPERFAMILY RING/U-box 102 165 - -
Seca10g01729 227 MobiDBLite consensus disorder prediction 35 57 - -
Seca10g01729 227 ProSiteProfiles Zinc finger RING-type profile. 118 159 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01729 Seca-Chr10 19092458 19093141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01729 1 201 C3H Transcription Factor Family AT1G26800 53.589 5.56e-67 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01729 - - pcin:129321278 275.789