Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01719 ATGTTGAATGTTGACGTAATTGGGAACAAAAAAAGGAAGAGATGTGGGAGGGTTTTCAGGTTCAAGAACTTTGGTGAACCAGGGTACCCAGTTATGTGTACTGCAGGGCCATTTCGTGAGAATGTGAATGCATTACTTGAATATGCAAATTTGGAGAGTAATTTAAGCATGGGAATGTCAATATGGTCATTTCAACTTGAAGTTCATCACCACCCACCTTTACATATCTTGTTGTTTGTGATTGAAGAGCCAATAGAGGCAGCACTAAATCGTCATTGCAAGCATTGTCAATACATTGGCTGGGGAAACCACTTCATTTGCAATAAGAAGTATCATTTTCTGTTACCCTCAAAGGAGGCACTGGCTACTTGCACAAGCTGTGAAGGGTGCTGTGATGTAATTGCTACAATGAATAATAATGGTAAGTCCAAATTAATAGAATTACAGGGCCATTTGATGCATGGTGTTTTTCACTCTAATGGATTCGGGCATTTGCTGTGTGTGAATGGATTGGAAACCGGTTCGAATTTGGCTGGGAACCAGATCATGGACTTTTGGAATCGTTTATGCAACGGATTGCAAGCAAAGAAAGTGAGTTTGAATGACATTTCACAGAAAAGAGGCATGGAACTGAGACTTGTTAATGGAATAGCATATAGTGAACCATGGTTTGGTCGTTGGGGTTACAAATTTGGTAGAGGATGCTTTAATGTAACTCAATCCATGTACCACAAGGCCATAGAGGCAATAAGAAGCATGCCACTCTACTTGTTCACACACCACATTGGCAATTCCAACCATGACATCCCACTCATTTTCTCAAGGTATCAAACACTTTCAGATAAGTCTCTAGTGACCCTTGGTGACCTATTTCGTTACATGTTAGAGCTCAAGTCACGCCTTCCACGTGAAACCTGCATTGGTTCCTATAACACAAGTGCTTTGGTTGAGACCAATTGTCGTTGGTCCCCTAAAAGGATTGAGATGGCAACAAGGGTCATTGTGGAGGCCCTGAAAAGAACAGAGTTCAGATGGGTTTCAAGGCAACAAGTTAGAGATGCTGCTCGTGCCTACATTGGTGACACAGGTTTACTTGATTTTGTTTTGAAGTCACTAGGAAACCACATTGTAGGAAACTACTTGGTTCGTAGGAGCTTGAATCCTGTGACCAAAGTGTTGGAATATTGTTTAGAAGATATTTCCAATGTGTACCCTTGTCATGAAGGCTTGGTCATGAGTAGTAGTAATAAAGTGAAGGATAAGTACAAGATCACAAGGTCTCAACTCATGAAGGATATGCTTTATTTGTATAAGTACATTCTCATAGACCCAAAACCAATGATAGGATCAGAGTTTCTCTCAGCTATACCATTGGCAGCTAGGATAATTCTTGACACCAAGTATTTTATCAAAGATTACTCTGGAGAGGTTCCTTTCAAGGTTGAATTAGGCTCTGAAGGAAGACTTAACCTTTATTGTAAAATTTTGTTGAGGAACAATGCTGGCACTGATGAGTATTTTAACATGGCAGTGCCACCTTATGAATGTGTCACATTGAAAAACAGTGCTACAATTAATGACTTAAAGGTGGAAGTTGAAAGGAATTTCAGGGAAATGTATTGGGGATTAAGGAATTTTGTGGTGGAATCAGCTGGGAATTTGAGTGCCAATGGGAATGAAATGGTTTTTGGGCTAATTGAAGTAGGTGGGAAACTTGTGCTTGAAGGTTATTGGCATGGTGGTGACATGGGAATAAATGTGATTGAACAAATATGTGAAAGTGACCCAAATAGTGGCATTGTGGACTGCATTTGTGGAACTAAAGAAGATGATGGTGAGAGGATGGTGTCTTGTGATATTTGTGAAATTTGGCAGCATACTAGGTGTGTTCGCATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTGTGCAAAAGGTGCGAGCAAGAAATTGTTCTGTTCCCTTCGTTGCCATAG 1977 0.4016 MLNVDVIGNKKRKRCGRVFRFKNFGEPGYPVMCTAGPFRENVNALLEYANLESNLSMGMSIWSFQLEVHHHPPLHILLFVIEEPIEAALNRHCKHCQYIGWGNHFICNKKYHFLLPSKEALATCTSCEGCCDVIATMNNNGKSKLIELQGHLMHGVFHSNGFGHLLCVNGLETGSNLAGNQIMDFWNRLCNGLQAKKVSLNDISQKRGMELRLVNGIAYSEPWFGRWGYKFGRGCFNVTQSMYHKAIEAIRSMPLYLFTHHIGNSNHDIPLIFSRYQTLSDKSLVTLGDLFRYMLELKSRLPRETCIGSYNTSALVETNCRWSPKRIEMATRVIVEALKRTEFRWVSRQQVRDAARAYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVMSSSNKVKDKYKITRSQLMKDMLYLYKYILIDPKPMIGSEFLSAIPLAARIILDTKYFIKDYSGEVPFKVELGSEGRLNLYCKILLRNNAGTDEYFNMAVPPYECVTLKNSATINDLKVEVERNFREMYWGLRNFVVESAGNLSANGNEMVFGLIEVGGKLVLEGYWHGGDMGINVIEQICESDPNSGIVDCICGTKEDDGERMVSCDICEIWQHTRCVRIPNDEEVPHIFLCKRCEQEIVLFPSLP. 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01719 658 ProSitePatterns Zinc finger PHD-type signature. 603 647 IPR019786 -
Seca10g01719 658 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 12 651 - -
Seca10g01719 658 CDD PHD_MMD1_like 602 647 - -
Seca10g01719 658 ProSiteProfiles Zinc finger PHD-type profile. 600 650 IPR019787 -
Seca10g01719 658 SUPERFAMILY FYVE/PHD zinc finger 594 650 IPR011011 -
Seca10g01719 658 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 588 651 IPR013083 -
Seca10g01719 658 Pfam PHD-finger 603 649 IPR019787 -
Seca10g01719 658 SMART PHD_3 602 648 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01719 Seca-Chr10 18965490 18968499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01719 10 658 PHD Transcription Factor Family AT5G22260 50.441 0.0 665
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca10g01719 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01719 K26271 - gmx:100780210 1173.3