Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01718 ATGAGCGATCACTTGGTCCTGTTCGTTGACCGTCTCGCGCGCCCTGTCCCCGTTGACCCCGTCGCGCAGCCCGCCCAGCTCCCTTCCGAACCCTCTCCCTCTCCGGCGACCGCAGATGCTGCCTCCGCCGCCGGGCCCTCCGCCTCCTCCCAGCCGGCAGATCGCGATGGCGAGGGTTGTGATGAGGAGGAGCCGCTGATCCAGATGGCAGAGTGCCGAATCTGCCAGGAGGAGGACAGTGCTTCCAATTTGGAGACGCCCTGCGCATGCAGCGGCAGTCTCAAGTATGCTCACAGAAAGTGCGTCCAGCATTGGTGCAATGAGAAAGGAGACATAATTTGTGAGATATGTCATCAGCCTTATCAACCTGGGTATACTGCCCCCCCACCACGCCCTCATCCCGAAGAAACTACCATTGATATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTGTTGGCAATTGCAGAGGCAGAACGTCAATTCTTGGATGCTGAATATGATGAGTATGCTGCTTCTAATGCAAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTGATGGCCCTTTTACTCTTGCGACATGCACTCTCTGTCACTGATGGTGATGCTTCTGATGATGATCCATCCAATTTTTTCTCTCTTTTCTTGCTTCGAGCTGCTGGATTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATTCTGCAACGCCGGCGACAAAGACAACAGGAGGCTGCGGCACTAGCAGCCACACAAGTTGCTTTTGTTCTACAATCTGGGCAGCGTAGAGGTCTACAGTTTGCTATAGCACCAGCACCAGGTCCTACAGTACACCAGGAACAAGTGTAG 879 0.537 MSDHLVLFVDRLARPVPVDPVAQPAQLPSEPSPSPATADAASAAGPSASSQPADRDGEGCDEEEPLIQMAECRICQEEDSASNLETPCACSGSLKYAHRKCVQHWCNEKGDIICEICHQPYQPGYTAPPPRPHPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQQEAAALAATQVAFVLQSGQRRGLQFAIAPAPGPTVHQEQV. 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01718 292 Pfam RING-variant domain 72 117 IPR011016 GO:0008270
Seca10g01718 292 Coils Coil 160 180 - -
Seca10g01718 292 ProSiteProfiles Zinc finger RING-CH-type profile. 64 124 IPR011016 GO:0008270
Seca10g01718 292 CDD RING_CH-C4HC3_MARCH 72 118 - -
Seca10g01718 292 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 253 IPR033275 -
Seca10g01718 292 MobiDBLite consensus disorder prediction 17 61 - -
Seca10g01718 292 Pfam Protein of unknown function (DUF3675) 123 242 IPR022143 -
Seca10g01718 292 SUPERFAMILY RING/U-box 70 122 - -
Seca10g01718 292 SMART ringv_2 71 118 IPR011016 GO:0008270
Seca10g01718 292 FunFam RING/FYVE/PHD zinc finger protein 60 128 - -
Seca10g01718 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 127 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01718 Seca-Chr10 18956506 18960205 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01718 71 117 C3H Transcription Factor Family AT2G37950 42.000 8.80e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01718 - - gmx:100779674 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01718 10 18956506 18960205 Seca10g01718 10 18956506 18960205 ECH