Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01713 ATGGACATGACCCCCACCCACACCCACTCCTTAGAAACAGACACTCGAACCCCATCACCGACTCAACACTCATCTCTCACCAATGGCTCCCTCAAGCGCCACCGTCAACCCACCGCCACCACCGCCGCATCCGCGGTGGTTTCCTACAAGGAGTGCCTCAAGAATCATGCAGCCAGTTTAGGTGGTCACGCCCTTGATGGCTGCGGCGAGTTCATGCCTTCTTCCTCCTGTTCCACCGAACCCCGCTCGCTAACATGCGCCGCGTGTGGATGTCACCGTAACTTCCACCGCCGTGACACACAAGATTTCTCCAATCCCCACTTTATCAGCTTCTACCACTCACCTCATCCCACTCACCATGGGCCCAGCCTGAGCACCAGCCCAAGTCGAAGCCCGAGCCCGAGCCTAAGCCCATCCCCACCACCGCTGTCTCAACATTTCCCACCCTCGTACCACCGCCACGCGTCAGCACCGCACGTGCTCTTATCCCTCGGGAATCCCGATGAGGGTCACGTGACCAGGACTGAAGAGAACCTAAGTGGGAAAAAGAGGCACAGGACCAAGTTCAGTCAAGAGCAGAAGGAGAAGATGCTGGAATTCTCTGAGAAGTTGGGTTGGAGAATGCCGAAAGGAGGAGATGAAGGAATGATGGAGGAGTTCTGCAATAGCATTGGTGTTTCCAGAGAGGTCTTCAAGGTTTGGATGCACAACAATAAGAACGCGTTCAAGAAGAGGTCTTCTGAAATGGGAAATGATGCTGCATCTCCTGATGAAAAGATCAACAACAGTAATGGCAATTGTGGTGATGGTAGAGATGGAATTCATAGTGATATTAACAATTCTCACAACACAAATGGCAGCAACAATGGCATTCATAAAAATTAA 885 0.522 MDMTPTHTHSLETDTRTPSPTQHSSLTNGSLKRHRQPTATTAASAVVSYKECLKNHAASLGGHALDGCGEFMPSSSCSTEPRSLTCAACGCHRNFHRRDTQDFSNPHFISFYHSPHPTHHGPSLSTSPSRSPSPSLSPSPPPLSQHFPPSYHRHASAPHVLLSLGNPDEGHVTRTEENLSGKKRHRTKFSQEQKEKMLEFSEKLGWRMPKGGDEGMMEEFCNSIGVSREVFKVWMHNNKNAFKKRSSEMGNDAASPDEKINNSNGNCGDGRDGIHSDINNSHNTNGSNNGIHKN. 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01713 294 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 49 99 IPR006456 -
Seca10g01713 294 NCBIfam homeobox domain, ZF-HD class 182 240 IPR006455 -
Seca10g01713 294 MobiDBLite consensus disorder prediction 133 147 - -
Seca10g01713 294 MobiDBLite consensus disorder prediction 114 195 - -
Seca10g01713 294 MobiDBLite consensus disorder prediction 1 39 - -
Seca10g01713 294 MobiDBLite consensus disorder prediction 170 195 - -
Seca10g01713 294 Gene3D - 169 244 - -
Seca10g01713 294 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 49 99 IPR006456 -
Seca10g01713 294 MobiDBLite consensus disorder prediction 277 294 - -
Seca10g01713 294 MobiDBLite consensus disorder prediction 245 294 - -
Seca10g01713 294 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 20 241 - -
Seca10g01713 294 Pfam ZF-HD protein dimerisation region 47 100 IPR006456 -
Seca10g01713 294 FunFam Zinc-finger homeodomain protein 2 170 244 - -
Seca10g01713 294 SUPERFAMILY Homeodomain-like 172 244 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01713 Seca-Chr10 18916097 18916981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01713 40 250 ZF-HD Transcription Factor Family AT1G69600 47.982 4.32e-54 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Seca10g01713 ZF-HD_dimer 4.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01713 - - lang:109355848 278.1