LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca10g01710	ATGGCTACCATGAAAAAGTCAACCTCCTCATCCTGTTTTACCTGTGAATGGGCTTATGATGTTTTTCTCAGTTTCCGAGGAGAGGATACTCGAACGGGTATCACTGGAAACCTTTACAATGCTCTGCGTGAAAAGGGAATCAACGCCTTCATGGATGATCAAAAGCTCAGTAGAGGAGAACAAATCACGCCAGCTCTCGTCAAGGCAATCCAACAATCTAGGATTGCAATTGTGATCTTTTCAGAAAACTATGCATCATCCACTTTTTGTTTGGAAGAACTCGTGATGATCATGAAGTGCATAAAATACAAGGGCAGGTTGGTTTGGCCATTATTTTATCGTGTGGACCCTTCTGATGTGCGCCATCAGAAAGGTAGTTACGCAGTAGCACTAGCCAAATGTGAAAGAAAAACCATTAACAAGGTGAAGGTCAAAAGATGGAGGTTAGCTTTGCAAGAAGCAGCTAATCTGTCCGGTTGGCATTTCAAACATGGGTACGAGTATGAGTTCATTAGGAAGATCATTCAAGAGGTCTCTGAAAGGGTTAATCGCATCCCTTTATATGTAGCTAATTACCCAGTTGGATTAGAGTCTAGAGTGCAAGAACTAAATTCACTTCTAGATGTTGAATCTAATGACAGGGTTCACATGGTAGGGATTTATGGAATCGGTGGAATTGGTAAGACAACACTTGCATGTGCTGTATTTAATTGCATTGCTGATCAATTTGAGAGTCTCTGTTTTCTTGCTGATATTAGAGAAAATTCAATGAAGCATGGGCTGGTACACCTTCAGGAAACACTTCTTTTTGAATTAGTAGGGGAGAAGGATGTTAAGTTATGGAATGTAAATAAAGGAATTCCTATAATTAAAAGTAGGCTATGTCAGAAAAAAATTCTTTTGATTTTGGATGATGTTGACAGATTGGACCAACTAAAAGCACTTGCTGGTGGACTTGATTGGTTTGGTGCTGGCAGCAGAGTTATTATCACAACAAGGGATAAGCATTTGTTGCGTGTTTATGGTGTTGCAAGAACCTATGAAGTAGAAGGATTAAATCATGAAGAAGCCTTGGAATTGTTTAGTTGGAATGCTTTTAAAAGAAAGGATGTTATTCCTTGTTATTTGGACATTTCAGAGAGAGTAATACTTCATTCTAATGGCCTCCCATTGTCTCTAGAAATAATAGGTTCTGACTTATTTGGTAAAACAGTGTCAGAGTGGAAATCAGCATTAGAAATCCCTTTATATTTCTGTTTTCCAGGATCAGCTATCCCAAGTTGGTTCAATCACTGTTGCAGTGAACCATCCCTGTCTCTGTGGTTCCGTAACAAATTCCCAGAGATTACTCTGTGTGTTGTGGGAGGTTTGGGTAGTTTTGCTGACTATGAGTTCGACCTGATCATTAATGGCAGTCAACAGCTCCCCAAGAACTTCTTCAATGTTAGGTGTTCATTTCAGACAAATCATATAACTTTGTTCGAATATCACAATGGTAAAATTGGAAGACTATATAGTGAGGATGGATGGAACCATGCTCAGATTTCATTACGGGAATATGCAACATCAGATGTGGAATGGATGGGAGTTCATGTACATGAACAAAAAACAAGCATGGCGGATATTCTATTTATAAATCCAGGGTTCCCATTAGTGGAAGGAAAAAATGAAAACGTCACACGTAAGGATACCCGCATGGCTTTCACTGGAAACCTCTACAATGCTCTTCATGACAAAGGAATCAACACCTTCATGGATGATCAACAGCTTAGGAAAGGAGAACAACAGTCTAGGATTGCAATTATTATATTCTCTGAAAACTATGCATCATCATCTTTTTGTTTGGAAGAGCTTGACAACATCCTGGACTGCTTCAAACATAGTGGGACGGGAGTTGGGTTAGAATCTCGAGTGCAAGAACTAAATTCACTTCTAGATGTTGAATCTAATGACGGGGTTCACATGGTAGGAATTTATGCAATCGGTGGAATTGGAATCTATGAAGTAGAAGGGTTAAATCATGAAGAAGCCCTTGAATTGTTTAGTTGGAATGCATTCAAAACAATAGCAGTTAATCCTAGTTACATGGACATATCAAAGAGAGTAATAATTTACTCTAATGATGGCCTTCCATTGTCTCTTGAAATAATAGGTTCTGACTTATTTGGTAAAACAGAGTTGGAATGA	2187	0.3882	MATMKKSTSSSCFTCEWAYDVFLSFRGEDTRTGITGNLYNALREKGINAFMDDQKLSRGEQITPALVKAIQQSRIAIVIFSENYASSTFCLEELVMIMKCIKYKGRLVWPLFYRVDPSDVRHQKGSYAVALAKCERKTINKVKVKRWRLALQEAANLSGWHFKHGYEYEFIRKIIQEVSERVNRIPLYVANYPVGLESRVQELNSLLDVESNDRVHMVGIYGIGGIGKTTLACAVFNCIADQFESLCFLADIRENSMKHGLVHLQETLLFELVGEKDVKLWNVNKGIPIIKSRLCQKKILLILDDVDRLDQLKALAGGLDWFGAGSRVIITTRDKHLLRVYGVARTYEVEGLNHEEALELFSWNAFKRKDVIPCYLDISERVILHSNGLPLSLEIIGSDLFGKTVSEWKSALEIPLYFCFPGSAIPSWFNHCCSEPSLSLWFRNKFPEITLCVVGGLGSFADYEFDLIINGSQQLPKNFFNVRCSFQTNHITLFEYHNGKIGRLYSEDGWNHAQISLREYATSDVEWMGVHVHEQKTSMADILFINPGFPLVEGKNENVTRKDTRMAFTGNLYNALHDKGINTFMDDQQLRKGEQQSRIAIIIFSENYASSSFCLEELDNILDCFKHSGTGVGLESRVQELNSLLDVESNDGVHMVGIYAIGGIGIYEVEGLNHEEALELFSWNAFKTIAVNPSYMDISKRVIIYSNDGLPLSLEIIGSDLFGKTELE.	729

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca10g01710	728	Gene3D	-	186	345	IPR027417	-
	Seca10g01710	728	Pfam	TIR domain	560	627	IPR000157	GO:0007165
	Seca10g01710	728	Pfam	TIR domain	18	184	IPR000157	GO:0007165
	Seca10g01710	728	SMART	till_3	18	157	IPR000157	GO:0007165
	Seca10g01710	728	SMART	till_3	560	664	IPR000157	GO:0007165
	Seca10g01710	728	SUPERFAMILY	Toll/Interleukin receptor TIR domain	8	160	IPR035897	-
	Seca10g01710	728	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	666	726	IPR027417	-
	Seca10g01710	728	FunFam	Disease resistance protein (TIR-NBS-LRR class)	15	184	-	-
	Seca10g01710	728	SUPERFAMILY	Toll/Interleukin receptor TIR domain	562	626	IPR035897	-
	Seca10g01710	728	Gene3D	-	556	633	IPR035897	-
	Seca10g01710	728	ProSiteProfiles	TIR domain profile.	17	182	IPR000157	GO:0007165
	Seca10g01710	728	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	561	624	IPR044974	GO:0006952
	Seca10g01710	728	Pfam	NB-ARC domain	198	412	IPR002182	GO:0043531
	Seca10g01710	728	PRINTS	Disease resistance protein signature	386	400	-	-
	Seca10g01710	728	PRINTS	Disease resistance protein signature	293	307	-	-
	Seca10g01710	728	PRINTS	Disease resistance protein signature	217	232	-	-
	Seca10g01710	728	Gene3D	-	351	414	IPR042197	-
	Seca10g01710	728	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	414	IPR027417	-
	Seca10g01710	728	Gene3D	-	13	185	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca10g01710	Seca-Chr10	18861158	18869728	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca10g01710	13	398	WRKY Transcription Factor Family	AT4G12020	27.226	2.54e-33	136

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca10g01710	-		-	ccaj:109801117	605.905