Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01706 ATGGAAGAGAGAAATGATGCTGAGAAACTTGATGAAGTTATGCTACCAGGTTTCAGGTTTCATCCAACTGATGAGGAGCTTGTTGGGTTTTACCTCAAAAGAAAGATTCAGCAACGGCCTCTGTCTATTGAGCTCATCAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAGTGCAGAGTTGGCCACTACAGGAGAGAAAGAGTGGTACTTTTACTGTCCCAGAGACAGAAAATATAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGGTTCTGGAAAGCTACAGGGACTGATAGGCCTATCTACTCCTCAGAAGGTTCTAAGTGTATTGGCCTGAAGAAATCCCTAGTCTTTTACAAAGGTAGAGCTGCCAAAGGAGTCAAAACTGACTGGATGATGCATGAGTTTAGGCTACCTTCTCTCACAGACTCACTGTCACCAAAGAAGTGCATAGACAAGACCATTCCTGTTAATGTGAGTAAAAGTTATGAATCTTGGGCAATTTGCAGGATATTCAAGAAAACCAATTCTACAGCTCAAAGAGCTCTGTCTCACTCTTGGGTCTCTTCCCTACCTGAAACAAGAACATCTGATATGCTAACCAAAGATCAAGACATTACCCAGTTTTGTTCAGCAAACATGTCATTAACAAAGAAAACTAGCTTACCAAGCCAGTTCTGTAGTACTAACAACAATGACACCCAAAACTTAACCACTAATAGCAGTACTCTTTGTCCTTTAGATGTTGCCTCTTATAAATCCATTATTAACCCATTGCTACACAAAGCCTTTGATTATTTACCCATTTCAAATGGAGATCTTAATACAAGCTTGGTATTCTCATCTCCACTTGAAACATCCAATACTAATGCCAAATCTACAATGGATGTTTCTTCCATGTTGTTGAATATGTCATCCTCCATGCTTGGAGATTTTAGCAAGACTTGTTCTGAGGATACAACTACAAGCTTTAATGGTGGATTGCAAGAGCACTGTAATGACTACTACTCAATACCATTTCTACGTGAGATGCAAGCCACATTTGGGAACCAATATGATAATGCATTGGTAAAGGTTCCTAATGTGAATGTGCCTCGTGTTGATGACCAAGAGTTGGAGACAGTAGCACGATCCATTGGGTTCCCATTGAGTAATATTGGCGATGCATGGAAGTCAAATCTGCTTTGGGATACTTCCTCTTGTCCTTGTGATGTTCCCTCTAGTTATAGTTATTCCACAACCAAGTGCTATACTTAG 1272 0.4033 MEERNDAEKLDEVMLPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPSAELATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSSEGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRLPSLTDSLSPKKCIDKTIPVNVSKSYESWAICRIFKKTNSTAQRALSHSWVSSLPETRTSDMLTKDQDITQFCSANMSLTKKTSLPSQFCSTNNNDTQNLTTNSSTLCPLDVASYKSIINPLLHKAFDYLPISNGDLNTSLVFSSPLETSNTNAKSTMDVSSMLLNMSSSMLGDFSKTCSEDTTTSFNGGLQEHCNDYYSIPFLREMQATFGNQYDNALVKVPNVNVPRVDDQELETVARSIGFPLSNIGDAWKSNLLWDTSSCPCDVPSSYSYSTTKCYT. 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01706 423 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 243 - -
Seca10g01706 423 FunFam NAC domain-containing protein 35 23 182 - -
Seca10g01706 423 Pfam No apical meristem (NAM) protein 16 143 IPR003441 GO:0003677|GO:0006355
Seca10g01706 423 Gene3D NAC domain 23 184 IPR036093 GO:0003677|GO:0006355
Seca10g01706 423 SUPERFAMILY NAC domain 13 179 IPR036093 GO:0003677|GO:0006355
Seca10g01706 423 ProSiteProfiles NAC domain profile. 14 179 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01706 Seca-Chr10 18843645 18845599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01706 1 352 NAC Transcription Factor Family AT1G26870 52.861 1.66e-107 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca10g01706 NAM 2.5e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01706 - - gmx:100783995 635.565