Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01688 ATGAACGTGGATCTGGAATCCTTGGCAGAGGCCACTTCTGGAGCTATAGGATCACTGCTCAGCACCACCATCCTGTACCCACTTGACACCTGCAAGACCAAGTACCAGGCCGAGGCACGTTCCCATGGTCACCAAAAGTACAGGAATCTCACTGATGTGTTATGGGAGGCAATATCTACCCGTCAGGTGCTTTCCCTTTACCAGGGCCTTGGTACAAAGAATCTTCAATCCTTCATTTCACAGTTTGTCTACTTCTATGGCTACAGCTACTTTAAAAGACTGTATCTGGAAAAAAGTGGTTATAAATCAATTGGAACAAAAGCAAACTTGGTAATTGCTGCTGCTGCTGGAGCTTGCACAGCCCTTGCGACTCAGCCCCTGGATACAGCCTCTTCAAGGATGCAGACAAGTGCCTTTGGAAAGTCTAAAGGGCTATTGAAAACCCTTACAGAAGGCTCCTGGAGTGATGCATTTGATGGCCTCAGCATTTCTTTGCTGCTGACCTCAAACCCTGCAATTCAGTATACAGTGTTTGATCAGCTGAAACAACGAGCGCTGAAGAATAAACAAAACAAATCTGATAAAGGAGTATCCCCAGCATCCCTTTCTGCTTTTATGGCCTTTCTATTAGGTGCAATTTCAAAGAGTATTGCTACCTGTCTAACATATCCTGCTATCAGGTGCAAAGTCATCATTCAAGCTGCAGACTCAGATGAAGCATCCTCTAAAACACAGAAAAAATCACCAAAAACTGTACCCGGAGTTCTCTATGGAATATGGAAAAGGGAGGGCATACTGGGGTATTTTAAAGGATTACATGCTCAGATCTTGAAAACGGTTTTGAGCTCAGCGCTACTCTTAATGATCAAGGAAAAGATCTCTGCTACTACTTGGGTACTTATACTTGCAATAAGAAGGTATCTATTACTCCCAAGGGGTAGGGTTAAAAACTTGTAA 957 0.4368 MNVDLESLAEATSGAIGSLLSTTILYPLDTCKTKYQAEARSHGHQKYRNLTDVLWEAISTRQVLSLYQGLGTKNLQSFISQFVYFYGYSYFKRLYLEKSGYKSIGTKANLVIAAAAGACTALATQPLDTASSRMQTSAFGKSKGLLKTLTEGSWSDAFDGLSISLLLTSNPAIQYTVFDQLKQRALKNKQNKSDKGVSPASLSAFMAFLLGAISKSIATCLTYPAIRCKVIIQAADSDEASSKTQKKSPKTVPGVLYGIWKREGILGYFKGLHAQILKTVLSSALLLMIKEKISATTWVLILAIRRYLLLPRGRVKNL. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01688 318 PRINTS Mitochondrial carrier protein signature 113 135 IPR002067 GO:0055085
Seca10g01688 318 PRINTS Mitochondrial carrier protein signature 20 38 IPR002067 GO:0055085
Seca10g01688 318 PRINTS Mitochondrial carrier protein signature 67 85 IPR002067 GO:0055085
Seca10g01688 318 Gene3D Mitochondrial carrier domain 5 297 IPR023395 -
Seca10g01688 318 FunFam Peroxisomal adenine nucleotide carrier 1 3 297 - -
Seca10g01688 318 Pfam Mitochondrial carrier protein 202 294 IPR018108 -
Seca10g01688 318 Pfam Mitochondrial carrier protein 104 188 IPR018108 -
Seca10g01688 318 Pfam Mitochondrial carrier protein 6 98 IPR018108 -
Seca10g01688 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 5 94 IPR018108 -
Seca10g01688 318 SUPERFAMILY Mitochondrial carrier 7 292 IPR023395 -
Seca10g01688 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 184 IPR018108 -
Seca10g01688 318 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 296 IPR018108 -
Seca10g01688 318 PANTHER PEROXISOMAL ADENINE NUCLEOTIDE TRANSPORTER 1 1 317 IPR045900 GO:0005347|GO:0006635|GO:0015217
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01688 Seca-Chr10 18614230 18617868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01688 23 311 Chloroplast and Mitochondria Gene Families AT1G25380 26.403 1.21e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01688 - - gmx:100787682 562.762