Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01685 ATGGAATTGGAAGCTGATCATCCAAATGGGATCCGAACCAGACCCAATTTCCCTCTTCAACTCTTAGAGAAAAAAGACGCCGCCGATGAGTCATCAGAACAACAACCCTGCTCCACCACCGCACACGACGGCGTCGGCAGCGCCGTCGTCAACTCTAACAGTAACAACCTCCATACGACAGAGCAGCAGAAGAAGCCGCCGCCAAAGCGGACCTCCACGAAGGACCGCCACACGAAGGTCGACGGCCGCGGCCGCCGGATCCGGATGCCGGCGGCGTGCGCCGCCAGGGTGTTCCAACTGACGCGTGAACTCGGACACAAATCCGACGGTGAAACCATCGAGTGGCTCCTCCAGCAAGCGGAGCCCGCCGTCATCGCCGCCACCGGAACCGGCACCATTCCCGCGAACTTCACCTCCCTCAACATCTCCCTCCGTAGCTCCGGCTCCACCATGTCGGCACCGTCGCACTACTTCCGCGGAAGCTACTTCAACCCTAGCACGTTCTCCGCCGCGGCAGCGGCGCAACTGAGGAGCCGCGCGGAGTGGGACAGGAACATAGCAATAAGCAATAACCTGAACATGAACGTGGAAGATTCTAGAAGAAGTTCCACAACCATATTGGAGAATAATCCTTCATCTTCTATCTCAGCAATTTTGAATTTCAATCATCTCAGCAACGTGAATGCCATTCTACAAGCGAAGCAGGAGCTCCGGGAAGAGGCCAACGCCGCCTCCGGCGGCGGAGGACTTGAATTAGTGGCTGGAGATTCCGATGGAAGCTTAGGGAGAAAGAGGAGGCCAGAGCAAGAATTGCCATATTTGTTACAATCTAGTGTGGGGTCACTTCCATCTAGCAATCCTTCCAATACGGCAGCGTTTTGGATGGTTGCGGGTCACGGAAACCAAAGCGTGAGTGGTGGTAACAATAGCAATGGTAGTGATCCCATTTGGGCAATTCCATCTGTTGGGAATAGTGGTGTGTATAGAAGTGCTATGCCAGCTGGAAGTGGGATTCACTTCATGAATTTCGCTTCTCCAATGCCACTTATGCCTGGAAGCCAATTAATTGGTGGCGGCGGTGGTAGTGGTGGTGGTACGTTTTTAACTGAAAGCAATTTGGGAATGCTTTCAGCAATTAATGCCTATAGGCAGATGATTCCGGCCAACGGTGTTTCGGAGTCTCCCGGGCAACATCATGGAGATGATGGACATGACTCAACCAGTCAACATTCCTGA 1236 0.5364 MELEADHPNGIRTRPNFPLQLLEKKDAADESSEQQPCSTTAHDGVGSAVVNSNSNNLHTTEQQKKPPPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSTMSAPSHYFRGSYFNPSTFSAAAAAQLRSRAEWDRNIAISNNLNMNVEDSRRSSTTILENNPSSSISAILNFNHLSNVNAILQAKQELREEANAASGGGGLELVAGDSDGSLGRKRRPEQELPYLLQSSVGSLPSSNPSNTAAFWMVAGHGNQSVSGGNNSNGSDPIWAIPSVGNSGVYRSAMPAGSGIHFMNFASPMPLMPGSQLIGGGGGSGGGTFLTESNLGMLSAINAYRQMIPANGVSESPGQHHGDDGHDSTSQHS. 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01685 411 ProSiteProfiles TCP domain profile. 73 127 IPR017887 -
Seca10g01685 411 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 27 408 IPR005333 GO:0003700
Seca10g01685 411 Pfam TCP family transcription factor 71 196 IPR017887 -
Seca10g01685 411 MobiDBLite consensus disorder prediction 397 411 - -
Seca10g01685 411 MobiDBLite consensus disorder prediction 63 83 - -
Seca10g01685 411 MobiDBLite consensus disorder prediction 32 62 - -
Seca10g01685 411 MobiDBLite consensus disorder prediction 389 411 - -
Seca10g01685 411 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01685 Seca-Chr10 18580624 18581859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01685 1 181 TCP Transcription Factor Family AT1G69690 56.684 7.68e-52 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca10g01685 TCP 1.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01685 - - gmx:100809966 561.607