Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01671 ATGTGGATCCGAGGATTCATTGTTTTGATCTTGGGTTGCATTTTGTTGTCCTTAATATCTGTGATTTCTGGTCTGGAACCCGAACTGGGATCGACCCGCGTTGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGAGCACATTTTTAAACTTGTGCGACTTGGAGGCTATAACACTAATCATTTCTTTCGGGTGGATAAGGGATTTGTTGCCCAAGTAGCAGATGTTAAGGGTGGAAGATCTGCTCCCATGAATGAGGAACAAAGAAGAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCGAAGTCAAACATGTACGGGGTATTCTTTCTATGGGAAGGTATGATGATCCAGACAGTGGTTCATCCTCGTTTTCAATACTACTTGGAAATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAGAGTTACTAAAGGCGATGATACATTAACAAAGCTTGAGCAACTACCTACCCGTAGAGAGGGTATATTTGTAATGCCAACAGAACGCATCACTATCCTCTCATCATATTACTATGGTAAGAATCTTTCAACCATAAGACTATTTTGTTTTAAATTAAATTAA 624 0.3926 MWIRGFIVLILGCILLSLISVISGLEPELGSTRVVFQTNYGDIEFGFFPTVAPKTVEHIFKLVRLGGYNTNHFFRVDKGFVAQVADVKGGRSAPMNEEQRREAEKTVVGEFSEVKHVRGILSMGRYDDPDSGSSSFSILLGNAPHLDGKYAIFGRVTKGDDTLTKLEQLPTRREGIFVMPTERITILSSYYYGKNLSTIRLFCFKLN. 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01671 207 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 CDD cyclophilin 35 188 - -
Seca10g01671 207 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 14 196 IPR044233 -
Seca10g01671 207 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 SUPERFAMILY Cyclophilin-like 32 192 IPR029000 -
Seca10g01671 207 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Seca10g01671 207 Gene3D - 24 194 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01671 Seca-Chr10 18397392 18402203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01671 34 189 U-box Gene Family AT5G67530 30.488 1.44e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01671 - - gmx:100819238 336.65