Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01668 ATGGCTTTCTTCCAAGCAAACTTCATGCTACAAACCCCTCACCATAATGATCATCAACCTCCACCTTTACTCAACTCAATTCTACCCACGTGTACACCTCAAGATTATCATGATGCAGGGGGACCATCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAAAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGATTGCAGCCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTCCTTAAAAAACAATATGAAGCTATTAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCAGAGATATTGGCACTGAAAAATAGAGAGCCAACTGAATCTATAAACCTTAATAAAGAAACAGAAGGATCCTGCAGCAACAGAAGTGAGAACAGCTCAGACAACATCAAGTTGGATATCTCAAGGACACCAGCTATTGATAGTCCTTTATCTACACATCACCACAGCAGAACCTTCTTTCCACCCTCTGCTAGGCCTACAACAGTTGCTCAGCTTTTTCAAACTTCCTCAAGGCCAGATCACCAATGCCAAAAGATTGATCAACTGGTCAAAGAAGAAACCTTAAGCAGCATGTTTTGTGGCATGGATCAGGATGATCAATCTGGGTTTTGGCCATGGTTGGAGCAGCATAATTTCAATTGA 855 0.4187 MAFFQANFMLQTPHHNDHQPPPLLNSILPTCTPQDYHDAGGPSFLGKRSMSFSSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQYEAIKSDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPLSTHHHSRTFFPPSARPTTVAQLFQTSSRPDHQCQKIDQLVKEETLSSMFCGMDQDDQSGFWPWLEQHNFN. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01668 284 MobiDBLite consensus disorder prediction 61 82 - -
Seca10g01668 284 PRINTS Lambda-repressor HTH signature 113 129 IPR000047 GO:0003677
Seca10g01668 284 PRINTS Lambda-repressor HTH signature 104 113 IPR000047 GO:0003677
Seca10g01668 284 FunFam Homeobox-leucine zipper protein ATHB-13 70 137 - -
Seca10g01668 284 ProSiteProfiles 'Homeobox' domain profile. 73 133 IPR001356 GO:0003677
Seca10g01668 284 Coils Coil 125 173 - -
Seca10g01668 284 Pfam Homeodomain 78 131 IPR001356 GO:0003677
Seca10g01668 284 CDD homeodomain 78 134 IPR001356 GO:0003677
Seca10g01668 284 Pfam Homeobox associated leucine zipper 133 173 IPR003106 GO:0006355|GO:0043565
Seca10g01668 284 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 55 214 IPR045224 GO:0003700
Seca10g01668 284 SMART HOX_1 76 137 IPR001356 GO:0003677
Seca10g01668 284 MobiDBLite consensus disorder prediction 181 201 - -
Seca10g01668 284 SUPERFAMILY Homeodomain-like 69 135 IPR009057 -
Seca10g01668 284 MobiDBLite consensus disorder prediction 178 201 - -
Seca10g01668 284 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Seca10g01668 284 Gene3D - 70 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01668 Seca-Chr10 18333872 18335919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01668 1 284 Homeobox Transcription Factor Family AT1G69780 63.545 2.52e-118 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g01668 Homeodomain 1.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01668 K09338 - gmx:100814080 486.493