Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01666 ATGCAAGATATGAAGCAGCAGCAGCAGAAGCAGAAGCAGGTGGCCACTGAAGAATCTAAGAAGAAGGAGCGTCACATTGTGACGTGGACTCAAGAGGAGGATGATATACTCAGAGAGCAGATTGGCATCCATGGAACTGAAAATTGGGCAATTATTGCTTCTAAATTCAAGGACAAAACGACAAGACAGTGTAGAAGAAGGTGGTACACTTATTTGAATTCTGATTTCAAGAAAGGAGGATGGTCACCAGAGGAAGACATGCTCTTATGTGAGGCTCAAAAAATATTTGGCAATAGGTGGACAGAAATAGCAAAGGTGGTTTCAGGCAGAACGGATAATGCTGTGAAAAACCGTTTCTCCACATTGTGCAAAAAGAGAGCAAAATATGAAGCCTTAGCAAAAGAGAACAACACTTCATACATCAATTCAAATAACAAAAGGATTATTTTTCAACAAGGGTATAATACAGATGCAGCATCAGAATCTACAGTAGCTGTTAAGAGGATGAGGAGGTCACATATCCCTGATGGTGCAGAAAAGAGCAACTTTGCGGATAGATCACATAAACAAAATGGAACCCCGATAAATCAGCAGTCAAGAGCACCATTTGCAGTTTTAGCTCAAAACTCTCATAATGTCAACAACTTGCCCGACCAGCCTCATGTCTGCAATGTGAAGTTTAGTGGTTATGCCCAAAACAACAAGATTCAAGGAACATTCCTTAAAAAGGATGACCCAAAGATAAGCGCATTGATGCAACAAGCAGAGCTACTAAGTTCACTAGCTCTAAAAGTTGATGCAGAGAACATGGACCAAAGTCTTGAAAATGCATGGAAGGTTCTTCAAGAGTTTCTGAACCGAACCAAAGAATCAGATATTCCTGGATATAAGCTTCCAGATTTACAGCTTGTAGATCTTAAAGATTTATTCGAAGACTTAAAGTGTAGTAGTGAGGAAATCCAGACATGTTGGAGGTACTTTTTTTTTATGAAGACCATCTTGGAGTTCATTGAAAATACAACTTCAATCTATTATAGGCACATGGACCTATATGAAGACTCTCCAGGCAGCTCTGAAAACAGTTCGGGATCAACTATCCTGCCTCATTGTGCTGGTGATAATTTGGAACACTCACTGCATCAGGATATTGGAACTGAACTGAAGTCTATACAAATTGGAGATCAAAAAGGAGTTGGAGGATGTGATCAAATGGTGCTTTCTAGTGCAACTTTGGATCAAAATATATTCCCATCTTGTGAGGAACATATGAACAATGATTGCATTGTTCCTGCCTTATCAAGTACAGAATTCAGTTCCCCTCTTCAAGTTACCCCTCTGTTCAGGTCCTTAGCTGCAGGAATTCCTAGCCCACAATTTTCAGAAAGTGAAAGGAACTTCCTTATGAAAACACTTGGAATGGAGTCTCCATCCCTCAACCCAAGTGCCAACCACTCACAACCGCCGCTCTGCAAAAGAGCCCTCCTACACAGCCTATAA 1497 0.4061 MQDMKQQQQKQKQVATEESKKKERHIVTWTQEEDDILREQIGIHGTENWAIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNTSYINSNNKRIIFQQGYNTDAASESTVAVKRMRRSHIPDGAEKSNFADRSHKQNGTPINQQSRAPFAVLAQNSHNVNNLPDQPHVCNVKFSGYAQNNKIQGTFLKKDDPKISALMQQAELLSSLALKVDAENMDQSLENAWKVLQEFLNRTKESDIPGYKLPDLQLVDLKDLFEDLKCSSEEIQTCWRYFFFMKTILEFIENTTSIYYRHMDLYEDSPGSSENSSGSTILPHCAGDNLEHSLHQDIGTELKSIQIGDQKGVGGCDQMVLSSATLDQNIFPSCEEHMNNDCIVPALSSTEFSSPLQVTPLFRSLAAGIPSPQFSESERNFLMKTLGMESPSLNPSANHSQPPLCKRALLHSL. 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01666 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 76 IPR017930 -
Seca10g01666 498 Coils Coil 5 25 - -
Seca10g01666 498 Gene3D - 79 149 - -
Seca10g01666 498 PANTHER MYB PROTEIN-RELATED 28 186 - -
Seca10g01666 498 SMART sant 25 74 IPR001005 -
Seca10g01666 498 SMART sant 77 125 IPR001005 -
Seca10g01666 498 CDD SANT 81 122 IPR001005 -
Seca10g01666 498 ProSiteProfiles Myb-like domain profile. 73 123 IPR001005 -
Seca10g01666 498 Pfam Myb-like DNA-binding domain 29 89 - -
Seca10g01666 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 127 IPR017930 -
Seca10g01666 498 FunFam Transcription factor MYB124 21 77 - -
Seca10g01666 498 Gene3D - 16 77 - -
Seca10g01666 498 SUPERFAMILY Homeodomain-like 25 119 IPR009057 -
Seca10g01666 498 MobiDBLite consensus disorder prediction 1 24 - -
Seca10g01666 498 CDD SANT 28 72 IPR001005 -
Seca10g01666 498 MobiDBLite consensus disorder prediction 175 196 - -
Seca10g01666 498 ProSiteProfiles Myb-like domain profile. 29 72 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01666 Seca-Chr10 18294132 18302054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01666 16 326 MYB Transcription Factor Family AT2G02820 62.857 5.46e-140 404
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca10g01666 Myb_DNA-bind_6 8.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01666 K09422 - gmx:100807667 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01666 10 18294132 18302054 Seca10g01666 10 18294132 18302054 ECH