Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01664 ATGGGTAACTGCCTAGATTCTTCTGCAAAAGTTGATGCAGCTCAAAGCTCCAGATCCACTTCTGGAATCTCAAAAACTACTCCTTCCAGCTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAACTCTTCCCACACCAAGGTCTGAGGGTGAAATCTTGTCTTCTCCCAATCTCAAGCCCTTCACATTCAATGAACTGAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTCATGTTTATAAGGGATGGATAGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTGGTTAAATTAATTGGGTACTGCTTGGAGGGAGATAACCGGCTATTGGTCTACGAGTTTATGCCCAAAGGGAGCTTAGAGAACCATCTGTTTAGAAATGTTTCAAAATTCACATTTACGGGATTGTTATATTTGACAGGAGGACCACAACCACTCTCATGGGCAGTGAGAATGAAAGTGGCCATTGGTGCTGCTAGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATATACCGGGATTTTAAAGCTTCTAACATCCTTCTGGATGCTGAGTTCAATTCTAAACTCTCTGATTTTGGATTAGCTAAGGCGGGTCCTACTGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACTCACGGATATGCAGCACCTGAATATGTTGCAACCGGTCGGTTAACAGCCAAAAGTGATGTATACAGTTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGAGCTGTTGATAAAACAATAACTGGTTTGGAGCAGAATCTGGTGGACTGGGCAAAACCTTATTTGGGCGATAAACGAAGACTATTCCGGATAATGGATTCCAAATTGGAAGGCCAATATCCACAAAAAGGAGCCTTCATGGCTGCTACACTTGCTCTACAATGCCTTAACAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTGTTAGCAACTCTGGAACAGATAGAAGCCCCTAAAAGTGCAGGCAGGAATTCCCTATCAGAACATCAGAGAATCCACACTCCTGTAAGAAGGTCTCCTGCGCGAAACAGGACCCCTTTAAGTCTAACTCCTACTGCATCCCCTCTGCCATCTCACCGGCAATCCCCTCGTGTCAGTGTGCACTAA 1278 0.4413 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNASTLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGDNRLLVYEFMPKGSLENHLFRNVSKFTFTGLLYLTGGPQPLSWAVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNSKLSDFGLAKAGPTGDRTHVSTQVMGTHGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTITGLEQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKSAGRNSLSEHQRIHTPVRRSPARNRTPLSLTPTASPLPSHRQSPRVSVH. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01664 425 MobiDBLite consensus disorder prediction 376 425 - -
Seca10g01664 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Seca10g01664 425 MobiDBLite consensus disorder prediction 1 58 - -
Seca10g01664 425 Gene3D Phosphorylase Kinase; domain 1 51 160 - -
Seca10g01664 425 Gene3D Transferase(Phosphotransferase) domain 1 161 393 - -
Seca10g01664 425 CDD STKc_IRAK 81 372 - -
Seca10g01664 425 FunFam Serine/threonine-protein kinase PBS1 161 387 - -
Seca10g01664 425 MobiDBLite consensus disorder prediction 398 425 - -
Seca10g01664 425 MobiDBLite consensus disorder prediction 9 58 - -
Seca10g01664 425 PANTHER OS01G0588500 PROTEIN-RELATED 36 373 - -
Seca10g01664 425 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Seca10g01664 425 ProSiteProfiles Protein kinase domain profile. 75 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01664 425 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Seca10g01664 425 SUPERFAMILY Protein kinase-like (PK-like) 47 369 IPR011009 -
Seca10g01664 425 Pfam Protein tyrosine and serine/threonine kinase 79 368 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01664 Seca-Chr10 18267668 18271490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01664 51 369 Glycoside Hydrolase AT3G07070 52.188 2.75e-111 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g01664 PK_Tyr_Ser-Thr 3.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01664 - - gmx:100809778 759.214