Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01662 ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTTAAGAACTTACTCTTGGGGAAGAAATCATCATCGAAGTCTAATTCATCAAAGAAGAATGATATTTTTAAACCTTCAAGTAACAAGGATGTGCTGGGGTTTTCTGAGGTATCCGTGCCTGATCCAACTGTGGATTCTTTGCTGATATCCCCACCAATATCTGGAACTAATGCTACTAAAGGAGCGCTTCCAGAAAAAGAAGTAGTTAGTAGGCCATCACAGGACAGGGATATTCTTCCAAATGGAGATAAAGAGGCTCATGCTCAAGCTATTACTAATTTTAGATCTCAAGAGGATCCTGAGAAACTCAGGCTTACAGAAGCAGCTATAAAAGTTCAGGCTGCTTCTAGAGGCTATCTGGCTCGTCGGGAATTTCAAACACTCAAAGGTGTCATACAACTGCAAGCTATTATCCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAAGGAATTGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTGCTATTGGGCGTGAAGTCCTGAAAATTCGCAAGGATACTCAATGTTCAAATTCTATTGGGGTTGTTACATCCACACAGGCAGAGAAGCTGTCAGAAAATGTCTTTGTTCACAAGCTTTTGGCTTCCTCATCCTATTCACTTCCTTTATCCCTCAATGGTGAACTTGGGGAACCTAACTTGGCTTGGAAGTGGCTTGACCGCTGGACAAGGTCACACTTTTGGTCACCTCTTCCTAAATTGAAAAAGAAACATGATTCAGTGTCTGATGAAAAAGATAGGAGTTGTCAAACAGTTGAAAAGGGACAAGTTAAAAGAAATACCCGGAAATCTCCTGTTGTGAAAGCTGATGATGGCTCAATTCCAGGTTCTAACAAATATAAAAATCGTCCAAAAAAGGATTCAAACCACTCATTGCTTTCAGCTCAGGAACACCCACAAAAGGAAATAGAGAAAAGTAGTCTTAAAAAAACTCGCGTGCAGAATGTTCCAGACAGATCTGAGGTTGTTAATGAGAAAAGAAAACCCAGCACTAGGAAAATTTCAGATGATATTGTTACAGATGTTTCTGAGCAGGGCCCAAAGGCCTCTTCAGAGAAAATGAAAGATTCAACAGTGCCAAAGTCAAAAGAGGCTGATCCTGAGAAAGGTCTTGAACAGCAAGCAAAAGAAGAGAATGATAATAAGCCACATAATGATCCTATTGCTGTCTTGCAGACTAGTGTGGAAAATGGTGGAGATGAAAAAATTCAAGGACTTTGTGAAGACTTGAATGATGGTGACAAAATTATCAGCAACAATTGCCAAAGAAGAGCTTCACTACCTGCTAATTTTAATGATCAAGATAGTGAATTACATAACACTCCAAGACTGCCCAGTTATATGGCTCCTACTGAATCTGCAAAAGCTAAGCTAAGGGCACAAGGCTCGCCAAGATTAGCTACTGATTTGGTAGACAAAAACAGTATAACCAGGCGGCATTCACTTTCATCTTCGCTTAATGGCAGGTCAGGTTCATTTTCCCCAAGAGCAGAAAGATTGATAGCCATGAGTGGCAGAGGAGTGCTAAAGACTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGAGAAGTTGATCCAACCTCAGTGGAGAAGGTGA 1683 0.41 MGKGRSPGKWFKNLLLGKKSSSKSNSSKKNDIFKPSSNKDVLGFSEVSVPDPTVDSLLISPPISGTNATKGALPEKEVVSRPSQDRDILPNGDKEAHAQAITNFRSQEDPEKLRLTEAAIKVQAASRGYLARREFQTLKGVIQLQAIIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSAIGREVLKIRKDTQCSNSIGVVTSTQAEKLSENVFVHKLLASSSYSLPLSLNGELGEPNLAWKWLDRWTRSHFWSPLPKLKKKHDSVSDEKDRSCQTVEKGQVKRNTRKSPVVKADDGSIPGSNKYKNRPKKDSNHSLLSAQEHPQKEIEKSSLKKTRVQNVPDRSEVVNEKRKPSTRKISDDIVTDVSEQGPKASSEKMKDSTVPKSKEADPEKGLEQQAKEENDNKPHNDPIAVLQTSVENGGDEKIQGLCEDLNDGDKIISNNCQRRASLPANFNDQDSELHNTPRLPSYMAPTESAKAKLRAQGSPRLATDLVDKNSITRRHSLSSSLNGRSGSFSPRAERLIAMSGRGVLKTDRSLSSSRDGTEKLIQPQWRR. 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01662 560 MobiDBLite consensus disorder prediction 308 367 - -
Seca10g01662 560 Pfam IQ calmodulin-binding motif 165 182 IPR000048 GO:0005515
Seca10g01662 560 Pfam IQ calmodulin-binding motif 139 156 IPR000048 GO:0005515
Seca10g01662 560 Pfam IQ calmodulin-binding motif 116 136 IPR000048 GO:0005515
Seca10g01662 560 MobiDBLite consensus disorder prediction 261 294 - -
Seca10g01662 560 MobiDBLite consensus disorder prediction 376 412 - -
Seca10g01662 560 PANTHER IQ-DOMAIN 5-RELATED 1 517 - -
Seca10g01662 560 MobiDBLite consensus disorder prediction 60 92 - -
Seca10g01662 560 MobiDBLite consensus disorder prediction 1 39 - -
Seca10g01662 560 Pfam Protein of unknown function (DUF4005) 462 537 IPR025064 -
Seca10g01662 560 MobiDBLite consensus disorder prediction 261 425 - -
Seca10g01662 560 SMART iq_5 137 158 IPR000048 GO:0005515
Seca10g01662 560 SMART iq_5 162 184 IPR000048 GO:0005515
Seca10g01662 560 SMART iq_5 114 136 IPR000048 GO:0005515
Seca10g01662 560 MobiDBLite consensus disorder prediction 456 475 - -
Seca10g01662 560 ProSiteProfiles IQ motif profile. 139 166 IPR000048 GO:0005515
Seca10g01662 560 MobiDBLite consensus disorder prediction 508 560 - -
Seca10g01662 560 MobiDBLite consensus disorder prediction 538 552 - -
Seca10g01662 560 ProSiteProfiles IQ motif profile. 165 190 IPR000048 GO:0005515
Seca10g01662 560 ProSiteProfiles IQ motif profile. 115 143 IPR000048 GO:0005515
Seca10g01662 560 Gene3D - 111 163 - -
Seca10g01662 560 MobiDBLite consensus disorder prediction 17 32 - -
Seca10g01662 560 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 182 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01662 Seca-Chr10 18200212 18208159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01662 4 560 IQD Protein Family AT1G14380 32.833 9.15e-74 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01662 - - aprc:113869184 796.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01662 10 18200212 18208159 Seca10g01662 10 18200212 18208159 ECH
Seca10g01662 10 18200212 18208159 Seca12g01413 12 14159383 14166700 ECH