Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01656 ATGTTGCAGCTACACTCCATTACCACTAAGCCAGTCCCAGTCCCAGTCCCAGTCCCAGTCCCAAGCCACTGTTTCGTCACTCCAAAGTCCATCTCTTTAAGGGGTGCTGGTGCTTCTACACCCACACCCACACCTACCTCACTCTCTGTCAAATGCCGCCACCCTGAGCTCTTCCAACCCACACCATTCCCCTCACCACCACAACGCCCTTCGCCTCTGTCTCCGCCTCCGCCTCCACCTCCTCCACCACGTTCTCCAGTTGGAGATTTGCCACCCAGGGTTTTTGTCGATCACTCCCTTTACAAAGGAAAGGGTGTACTCACGGTGTCTCCTAGACCTCCGGAATTTACTACATTGAATTCTGGGGCATTCAAAATATCTAGGGAAGGTTGTGTGCAGCTTCAATTTGCTCCTGCAGTTGGTATTCTCGAAATTGACAGCAGGCTCCAATATGATTGGAAAAAAAAGCAGGTATTCTCACTATCAGTGAATGAAATGGGAATTCTTAGTGGCCTTGGTACAGAGGACTCATGTGAATTTTTTCAACATCCTTTTAAGGAAAAAAGTGATGAAGGTAAACTGAAAAAAGTTTTGAAGGTGGAGCCGCTTCTGGATTATTCTGGTCACATGTTTCACCTAGGTGTTGTTCAAAACAAGGTCGAGAATGTGGATGAAGGCATCTTTATTCCTGTTACAAGAGCAGAGTTAGCAGTTTTCAGATCGATTTTCAATTTTATCACGCCATACCTTCTAGGTTGGAATGCCTTTGCAAACTCCATAAAGCCAGAGGTATATAGCCGAGTGAATAATGCTAACCCAAGATACAGAGTAGATGAATAG 840 0.4595 MLQLHSITTKPVPVPVPVPVPSHCFVTPKSISLRGAGASTPTPTPTSLSVKCRHPELFQPTPFPSPPQRPSPLSPPPPPPPPPRSPVGDLPPRVFVDHSLYKGKGVLTVSPRPPEFTTLNSGAFKISREGCVQLQFAPAVGILEIDSRLQYDWKKKQVFSLSVNEMGILSGLGTEDSCEFFQHPFKEKSDEGKLKKVLKVEPLLDYSGHMFHLGVVQNKVENVDEGIFIPVTRAELAVFRSIFNFITPYLLGWNAFANSIKPEVYSRVNNANPRYRVDE. 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01656 279 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN WHY2, MITOCHONDRIAL 81 274 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca10g01656 279 Pfam Whirly transcription factor 100 242 IPR013742 GO:0003697|GO:0006355|GO:0006952
Seca10g01656 279 SUPERFAMILY ssDNA-binding transcriptional regulator domain 92 276 IPR009044 GO:0003677|GO:0006355
Seca10g01656 279 MobiDBLite consensus disorder prediction 59 89 - -
Seca10g01656 279 Gene3D Transcriptional Coactivator Pc4; Chain A 88 272 IPR009044 GO:0003677|GO:0006355
Seca10g01656 279 MobiDBLite consensus disorder prediction 56 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01656 Seca-Chr10 18156364 18160473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01656 42 278 Whirly Transcription Factor Family AT1G14410 56.118 1.01e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Whirly Seca10g01656 Whirly 6.5e-44 CL0609
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01656 K26559 - pcin:129310571 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01656 10 18156364 18160473 Seca10g01656 10 18156364 18160473 ECH