Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01653 ATGTCAAGGGATTCACTTGTTTTATCAGGGGCTTACAATAATGAAGAAGTTGCTCCAAGAGCTTATGATTTGGTTGCGGTCAAGTACTGGGGAACATCAACTTTCACAAAATTTCCCGTATCTGATTATGAGAAAGAAATTAAGATTATGATAACTGTAACAAAAGAAGAATATCTTGCTTCATTAAGAAGGAGAAGCAGTGGTTTTTCCAGAGGTGTATCAAAGTATAGAGGAGTGGCAAGGCCCCATCACAACGGAAAATGGAAGGCAAGGATAGGAAGAGTGTTTGGCAACAAGTACCTCTACCTTGGGACATACAGTACACAAGAAGAGGCAGCTCGGGCATATGATATTGCAGCAATTGAACACAGAGGGATAAATGCAGTGACAAACTCTGACCTAAGGACTTATATCAGAAGCCTAAGACCAAGTGCTCATTCTACTGCTTCTCAAAATCAAAAGCCAAGTATAGATAACCAGCCCTTTACAACACCTAACCTTATCCAAACTAGAGAAACCACTAAGGTGTCCAATTTCAACTTCCATCCATTCCCTGGAGGTGAATTGGACAACAACAAAAAGCAAGAAATTTCCCAGTATATGACCCCTTTAAGTCGTGGCAATAAATCAGCTTCCTCAACAGCATTAGGACTTCTCCTAAAATCCTCAGTATTCAGAGAACTGGTGCAGAGAAATCTGAATTTTGTAAATGAAGAAACTGAAATGAAAAACACACAAGAAGGCACTGATGATGGAGTACGAGTACCTCTTACATATGCTATTCCAATAGCAACAGCTTACCTAACTTGGAGTCGCCAGAAGAGAGCACATTGCCACTGTATCACAGTTCCCTGCAATTCCCCCATGGAACGGTACTTTAAAAGTTTCTGA 891 0.4052 MSRDSLVLSGAYNNEEVAPRAYDLVAVKYWGTSTFTKFPVSDYEKEIKIMITVTKEEYLASLRRRSSGFSRGVSKYRGVARPHHNGKWKARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEHRGINAVTNSDLRTYIRSLRPSAHSTASQNQKPSIDNQPFTTPNLIQTRETTKVSNFNFHPFPGGELDNNKKQEISQYMTPLSRGNKSASSTALGLLLKSSVFRELVQRNLNFVNEETEMKNTQEGTDDGVRVPLTYAIPIATAYLTWSRQKRAHCHCITVPCNSPMERYFKSF. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01653 296 Gene3D AP2/ERF domain 74 134 IPR036955 GO:0003700|GO:0006355
Seca10g01653 296 Gene3D AP2/ERF domain 2 41 IPR036955 GO:0003700|GO:0006355
Seca10g01653 296 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Seca10g01653 296 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 198 - -
Seca10g01653 296 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
Seca10g01653 296 CDD AP2 74 131 IPR001471 GO:0003700|GO:0006355
Seca10g01653 296 SUPERFAMILY DNA-binding domain 74 131 IPR016177 GO:0003677
Seca10g01653 296 MobiDBLite consensus disorder prediction 143 164 - -
Seca10g01653 296 Pfam AP2 domain 74 123 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01653 Seca-Chr10 18144484 18145805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01653 5 175 AP2-EREBP Transcription Factor Family AT3G54320 59.649 6.63e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca10g01653 AP2 4.9e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01653 - - gmx:100798483 357.066