Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01649 ATGGGGTTGGGTGCTGAAAATGGTAAGGTGGTGGAGTCTTGGGATGTGTGTAAATCAAAAGGGAGGAAGAAAAAGGAAGAGGATGAGGGTGTGGTGGAAGAGGAAGAGACTGGGTGTTGGATTAGGCTGAGATTCATTGGGAGCTGCATTTCTTCAAGATCCAAGGTTGATAGCTCAGTCAGTGGCACCAGCCCTCATTATGCTGAAAGTAAATCAACTAATGATAGAAGTAGAGACCAACCAACCGCTCCAGTAGTCTCTTCTACAACCACTAGTAATACAGAAAGCAATTCATCCACTTCCAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGGCTGCGAAAATTCTCTTTCAATGATCTTAAGTTGGCAACAAGAAATTTTCGACCTGAGAGTTTTCTTGGTGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACCGCTCCAGTGAAACCTGGCACAGGGCTTACTGTTGCTGTAAAAACACTCAACCATGATGGGTTACAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCCAAACCTTGTTAAACTGATAGGTTACTGCATTGAAGATGATCAAAGGTTGCTAGTGTATGAGTTCATGCCTCGAGGAAGCTTGGAAAACCACTTATTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGGATGAAAATTGCACTAGGAGCTGCTAAAGGACTTGCTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAATATACTATTAGATATTCAATCTAATATAGTTCCAATTCAGGACTACAATGCCAAGCTCTCAGACTTTGGCCTTGCTAAAGATGGCCCAGAAGGTGATAAAACTCATGTGTCTACACGTGTGATGGGAACCTATGGTTATGCAGCACCAGAATATGTCATGACAGGCCATCTTACATCAAAAAGTGACGTGTACAGTTTCGGAGTGGTACTACTTGAGATGTTGACTGGCAGAAGATCCATGGACAAACACCGACCCAATGGTGAGCACAACCTTGTGGAATGGGCTCGACCGCATCTAGGAGAGAGGAGAAGGTTCTACAGGTTGATAGACCCTCGCCTGGAAGGTCACTTCTCCATAAAAGGAGCTCAGAAAGCTGCCCAACTAGCTGCTCACTGCATTAGTAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTAGTAGAAGCTTTAAAGCCTCTGCCAAATCTTAAGGACATGGCAAGCTCTTCATATTATTTCCAGACAATGCAAGCTGATCGCTTTGGAGCAAGCCCAAATACTAGAAATGGTCAGACACAAGGAGCATTGCTCACCCGGAATGGACAGCAGCGAAGGAGCCTTTCAATACCAAATGGTACTCATGCATCTCCTTATCACCATCAGTATCCCCAACAATCACCAAAACCCAATGGCAAAACTTAG 1479 0.4368 MGLGAENGKVVESWDVCKSKGRKKKEEDEGVVEEEETGCWIRLRFIGSCISSRSKVDSSVSGTSPHYAESKSTNDRSRDQPTAPVVSSTTTSNTESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLIGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWSIRMKIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDIQSNIVPIQDYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPHLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCISRDPKARPLMSEVVEALKPLPNLKDMASSSYYFQTMQADRFGASPNTRNGQTQGALLTRNGQQRRSLSIPNGTHASPYHHQYPQQSPKPNGKT. 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01649 492 SUPERFAMILY Protein kinase-like (PK-like) 106 416 IPR011009 -
Seca10g01649 492 ProSitePatterns Protein kinases ATP-binding region signature. 134 166 IPR017441 GO:0005524
Seca10g01649 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 257 269 IPR008271 GO:0004672|GO:0006468
Seca10g01649 492 Gene3D Phosphorylase Kinase; domain 1 87 213 - -
Seca10g01649 492 MobiDBLite consensus disorder prediction 77 100 - -
Seca10g01649 492 MobiDBLite consensus disorder prediction 54 70 - -
Seca10g01649 492 CDD STKc_IRAK 134 419 - -
Seca10g01649 492 MobiDBLite consensus disorder prediction 441 492 - -
Seca10g01649 492 Pfam Protein tyrosine and serine/threonine kinase 133 416 IPR001245 GO:0004672|GO:0006468
Seca10g01649 492 ProSiteProfiles Protein kinase domain profile. 128 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01649 492 MobiDBLite consensus disorder prediction 54 103 - -
Seca10g01649 492 FunFam Probable serine/threonine-protein kinase PBL8 214 437 - -
Seca10g01649 492 FunFam Serine/threonine-protein kinase BIK1 95 213 - -
Seca10g01649 492 MobiDBLite consensus disorder prediction 16 35 - -
Seca10g01649 492 Gene3D Transferase(Phosphotransferase) domain 1 214 437 - -
Seca10g01649 492 PANTHER OS01G0588500 PROTEIN-RELATED 92 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01649 Seca-Chr10 18111463 18115826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01649 75 416 Glycoside Hydrolase AT3G07070 52.312 6.08e-114 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca10g01649 PK_Tyr_Ser-Thr 7.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01649 - - gmx:100787151 853.973