Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01645 ATGATGGAGTTCGAATCCAACCACTTGTGTGCGATAGACCGATCCTTCGACGACCGTTACTCTCGCCACGCGCGCGAGTCGCTCGACGAATTGCCTGAGAATTTCACCATCACCGACCCTTCCGTTTCGGGCCACCCAATCGTTTTCGCCAGCCTTGGCTTCCTCAAGATGACGGGCTTCACGCGTGACGAGGTTGTTGGGAGGAGAGGAGGGATGTTTCAGGGGCCAGGGACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTCGCCAAGAGAGAGAGGCTCAAGTCGTTTTGTTGAATTATCGCAAGGACGGCACGCCGTTTTGGATGTTGCTTCGTATTTGCCCTGTTTTTAGTGCTCACGGTGGTGCCGTCGTTCACTTCGTCGCCGTTCAGGTGCCACTTCACCGGAAACCCAGGGTTTGTAGGGGAGGAGGAGGGTTTTCTCAGGTGCATGATTTTAGTGTGTACCGATGTTGTCGGAAGGAAGTGTGCTCTGATTCTTTGGCTGAACTTGGTCGTGCTTCTTCCCACAATCAAGTGTTGGAACATGATGTCACAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGATGAGAAGAGAAGCGCTGTGATTGCCATGGACAACATCTTTTCTGTGCTAACTTACTATAGTGAGTCGACGGGCAAATTGGTGTGTAGAAAGAGATGCAGCATTCCTGACGTGGGTCTTCTTAGCTCATCCTTGATTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTGCCAGACATGCCTATTGTTTACGCCAGTGATGCCTTCTTGAAATTGACAGGCTATGCAAGAGATGAAGTGTTGGGCCGCAACTGTAGATTTTTAGGTGGAGCAGATACTGATACCTCAAGTTTACATCTGATAAGCGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTCTGGAATCTTCTTCATATATCACCTGTTCGGAATGCTTCTGGCAAGGTAGCATACTTCGTGGGAATTCAAATAGAAGACGACTATAAAAACGAGGATAGACAGTGTTGGGGCCCTGATATGAGGCACCTTAGCGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCCGGATCGTCGAAGTCATAG 1194 0.4782 MMEFESNHLCAIDRSFDDRYSRHARESLDELPENFTITDPSVSGHPIVFASLGFLKMTGFTRDEVVGRRGGMFQGPGTCRRSVMEIREAVRQEREAQVVLLNYRKDGTPFWMLLRICPVFSAHGGAVVHFVAVQVPLHRKPRVCRGGGGFSQVHDFSVYRCCRKEVCSDSLAELGRASSHNQVLEHDVTELESEEPCEASDDEKRSAVIAMDNIFSVLTYYSESTGKLVCRKRCSIPDVGLLSSSLIISLGRIKQSFVLTNPHLPDMPIVYASDAFLKLTGYARDEVLGRNCRFLGGADTDTSSLHLISESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRNASGKVAYFVGIQIEDDYKNEDRQCWGPDMRHLSVVGVVKVAVRSLSMTAGSSKS. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01645 397 SMART pac_2 319 361 IPR001610 -
Seca10g01645 397 SMART pac_2 97 140 IPR001610 -
Seca10g01645 397 FunFam protein TWIN LOV 1 256 392 - -
Seca10g01645 397 SUPERFAMILY PYP-like sensor domain (PAS domain) 33 132 IPR035965 -
Seca10g01645 397 PANTHER PROTEIN TWIN LOV 1 12 387 - -
Seca10g01645 397 Pfam PAS domain 256 355 IPR000014 -
Seca10g01645 397 Pfam PAS domain 45 134 IPR000014 -
Seca10g01645 397 CDD PAS 47 133 IPR000014 -
Seca10g01645 397 CDD PAS 265 354 IPR000014 -
Seca10g01645 397 Gene3D PAS domain 256 387 - -
Seca10g01645 397 Gene3D PAS domain 34 152 - -
Seca10g01645 397 FunFam Protein TWIN LOV 1 isoform D 34 220 - -
Seca10g01645 397 SUPERFAMILY PYP-like sensor domain (PAS domain) 259 355 IPR035965 -
Seca10g01645 397 ProSiteProfiles PAS repeat profile. 20 68 IPR000014 -
Seca10g01645 397 NCBIfam PAS domain S-box protein 269 354 IPR000014 -
Seca10g01645 397 NCBIfam PAS domain S-box protein 47 128 IPR000014 -
Seca10g01645 397 ProSiteProfiles PAS repeat profile. 269 291 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01645 Seca-Chr10 18073234 18078215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01645 19 357 AGC Kinase Gene Family AT5G58140 31.300 8.12e-57 198
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01645 - - gmx:100785562 579.711