Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01642 ATGGCAAGTGGCAAGCTTTATGGGGGTTCCAACATGACAACACTTATTCTCCAAAACGATAGGCTTCCTTGCTCCTCTGAAGTTCTTGAATCTCTCTGGGTTCACACCACTACCCCTGCTTCTTTCCAAGGTTCAAAATCGGTGGTTGATTTTGAGAATGTTAGTGGGAGCAGGGTGACAGATAGGCCCTTCTTTCAACCGCTTGAAAAGGAAGAGAACGGTGATGAGGATTACGAAACGTGCTTCCATCAACCAGGAAAGAAAAGGAGGCTCACAAGCGAACAAGTTCAGTTCCTTGAAAGGAACTTTGAGGTAGAAAACAAGCTTGAACCTGAAAGGAAGGTGCAGCTTGCAAAGGAGCTTGGCTTGCAGCCAAGGCAAGTGGCTATATGGTTCCAAAACCGAAGGGCAAGGTTTAAGACCAAACAGCTAGAAAAAGACTATGGCACATTGAAAGCTAGTTATGACAGACTCAAAGATGACTATGAAAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTGAAGAACAAATTGATTCCAAGAGATAAAGAGAAAGAGAATTCAGATGACAAGTCATCCCCTGATGCTGTCAATTCACCCCACAAAGAGCCTATGGATTTAATCTCAAATGCAACTTCTGAAAATGGGTCCAAAGTGCCACTCCCTATTATGGTAACATGCAAGCAAGAAGATGCCAATTCAGCTAAAAGTGATGTGCTTGATTCGGACAGCCCACATTGCACTGATGGGAACCATCCTTCCTCATTTGTGGAGCCTGCAGATTCCTCTCATGCTTTTGAACCAGACCAGTCAGATTTCTCACAAGATGAAGATGATAACCTAAGTGAAAACCTTTTGACCCTCCCATGCTTACCAAAGGTGGAAGTAGATGTCTGTTATGATCACCCACCTGAAAACTCTTGTAATTTTGGCTTCCCCGTTGAAGATCAAACCTTCTGTTTCTGGCCCTACTGA 990 0.4333 MASGKLYGGSNMTTLILQNDRLPCSSEVLESLWVHTTTPASFQGSKSVVDFENVSGSRVTDRPFFQPLEKEENGDEDYETCFHQPGKKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASYDRLKDDYENLLQENDKLKEEVNSLKNKLIPRDKEKENSDDKSSPDAVNSPHKEPMDLISNATSENGSKVPLPIMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFVEPADSSHAFEPDQSDFSQDEDDNLSENLLTLPCLPKVEVDVCYDHPPENSCNFGFPVEDQTFCFWPY. 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01642 329 Pfam Homeodomain 87 140 IPR001356 GO:0003677
Seca10g01642 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 69 232 IPR045224 GO:0003700
Seca10g01642 329 FunFam Homeobox-leucine zipper protein HAT5 80 144 - -
Seca10g01642 329 ProSitePatterns 'Homeobox' domain signature. 117 140 IPR017970 GO:0000981|GO:0006355
Seca10g01642 329 PRINTS Lambda-repressor HTH signature 122 138 IPR000047 GO:0003677
Seca10g01642 329 PRINTS Lambda-repressor HTH signature 113 122 IPR000047 GO:0003677
Seca10g01642 329 Gene3D - 90 136 - -
Seca10g01642 329 MobiDBLite consensus disorder prediction 178 202 - -
Seca10g01642 329 SUPERFAMILY Homeodomain-like 75 144 IPR009057 -
Seca10g01642 329 Coils Coil 141 182 - -
Seca10g01642 329 Gene3D - 137 184 - -
Seca10g01642 329 ProSiteProfiles 'Homeobox' domain profile. 82 142 IPR001356 GO:0003677
Seca10g01642 329 MobiDBLite consensus disorder prediction 237 284 - -
Seca10g01642 329 MobiDBLite consensus disorder prediction 178 223 - -
Seca10g01642 329 Pfam Homeobox associated leucine zipper 142 183 IPR003106 GO:0006355|GO:0043565
Seca10g01642 329 CDD homeodomain 85 143 IPR001356 GO:0003677
Seca10g01642 329 SMART HOX_1 84 146 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01642 Seca-Chr10 17993293 17995576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01642 44 318 Homeobox Transcription Factor Family AT3G01470 38.571 4.31e-44 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca10g01642 Homeodomain 3.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01642 K09338 - adu:107489132 446.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01642 10 17993293 17995576 Seca10g01642 10 17993293 17995576 ECH
Seca10g01642 10 17993293 17995576 Seca10g01642 10 17993293 17995576 PCT