Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01634 ATGAGTCGCAAGAGAGACAGACCCGACTTTTCCAGAAACGCTGCCAAGCGCCGCCGCCCCCTGCCAGAGCCCACAGAGGACGAGAGGCCCGCGCCGAGGCCTCCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCCCTATGGACTGCTCCGTGCTCGATCTCAAGTCCCGATTCGAGATCTACGGCTCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGAAACAAGGACTCAGCCGACGCCGCCATCGCCGCCGGCCTCGACACTTCCTTCGGAATCACAGTCAACTCCAAAAAGGTTCAGGTTTTGTGGGCTACCGATCCTCTTGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCTATATCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGCAGGCATGGAAGAGGCAATAGACTCGCTTCAGCTATTGGGACTACCAAAAGTAATGAGGATAGCTCAGTTCTAGAAGTGCCTTTCAGGGGCAGAGAAATTGTTGCTTACGATGATATCCTAACAGGAAGTAAGTTAAGTAGTGAGATGGAAGAAGATGAACGATGGAAAAAAGCAGAGAAGAAGGAAGATGAATCACAACAACGAATATGGAGTTGGGGTGCTGGAACCGAGGGTCAGTTAGGAACAGGCAATCTTCAGGACGAGCACATCCCTCAACTCCTTCACCAACCCTCTCTCTCATCCATCTCTTCCCTTGCCTGTGGCGGCGCCCACGTCATCGCCTTGACCTCTGCTGGGAAGGTATTGTCATGGGGTAGGGGCAATTCTGGTCAACTAGGCCATGGGGAGGTTGTTAATAACGCCTTGTATCCCAAGACTGTAACATCATTGGACGGCTACTTCATAACCCATGTCTCAGCTGGCTGGAGCCACTCAGGTTTTGTTTCAGATTCTGGGTGCCTGTTCACTTGTGGGGATGGCTCGTTTGGTCAACTTGGGCATGGGGATTATGCCTCACACTGCTCCCCTGTCAGAGTGTCATGCTTTGTTGATCAGCATGTTGCACAGGTAGCATGTGGCATGCGCCACTCCCATGTCTTGTTGAAAGATTGTCCATCAAATCAAGTTTATGGTTTTGGCTCTGGGAAGCGTGGTCAACTGGGTGTCTCCAAAGATAGGATCAAATCTATTAATCTTCCTAAAGTTGTTAGTGGCTTTGAAGATGTAGAAATAGTTGAAATTGCTGCAAATGGAGATCACAGTGCTGCAGTATCTGTTGATGGGCATCTTTACACCTGGGGAAGAGGCTTCAAGGGCTTTGAAGATTCTCACTTTCCGCAATGCTTAAACTCTACTTTGAATTTTACCAAAGCCACTCTGGGATGGAACCATGCTTTAGCTATGAATGATGAAGGGGAAGTTTACATGCTTGGTGGCAACCACCTTGGAGGCCTTAGTGATCTTCAGAATGTAAGCCCAGCTAAGCAGTTACCTGATGCAAGAGAATCCAATTTGGAGAGAGTCTCTGGCCTTGATGGGACGAAGGTTTCTGATATTGCTACCGGAGCTGAGCATTCCGTCCTTAATGGAGAAGTAAAGACATGGGGTTGGGGTGAGCACGGTCAACTTGGCTTAGGGGATACTTGTGATCGGATCAGTCCTGTTACCGTAAGTCTCGGTTATGATCCAAATGAAGCTGCAACAATCAGAGTTTACTGTGGAAGTGGGTTCACGTTTGCTTTAACCATGCCCTAA 1740 0.5017 MSRKRDRPDFSRNAAKRRRPLPEPTEDERPAPRPPPPSAVVVMGLPMDCSVLDLKSRFEIYGSISRIRIDRDAVGYITYRNKDSADAAIAAGLDTSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSISKLVRAEVPLSRHGRGNRLASAIGTTKSNEDSSVLEVPFRGREIVAYDDILTGSKLSSEMEEDERWKKAEKKEDESQQRIWSWGAGTEGQLGTGNLQDEHIPQLLHQPSLSSISSLACGGAHVIALTSAGKVLSWGRGNSGQLGHGEVVNNALYPKTVTSLDGYFITHVSAGWSHSGFVSDSGCLFTCGDGSFGQLGHGDYASHCSPVRVSCFVDQHVAQVACGMRHSHVLLKDCPSNQVYGFGSGKRGQLGVSKDRIKSINLPKVVSGFEDVEIVEIAANGDHSAAVSVDGHLYTWGRGFKGFEDSHFPQCLNSTLNFTKATLGWNHALAMNDEGEVYMLGGNHLGGLSDLQNVSPAKQLPDARESNLERVSGLDGTKVSDIATGAEHSVLNGEVKTWGWGEHGQLGLGDTCDRISPVTVSLGYDPNEAATIRVYCGSGFTFALTMP. 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01634 579 CDD RRM_SF 44 102 - -
Seca10g01634 579 Pfam Regulator of chromosome condensation (RCC1) repeat 261 309 IPR000408 -
Seca10g01634 579 Pfam Regulator of chromosome condensation (RCC1) repeat 370 419 IPR000408 -
Seca10g01634 579 Pfam Regulator of chromosome condensation (RCC1) repeat 210 257 IPR000408 -
Seca10g01634 579 Pfam Regulator of chromosome condensation (RCC1) repeat 525 576 IPR000408 -
Seca10g01634 579 Pfam Regulator of chromosome condensation (RCC1) repeat 313 361 IPR000408 -
Seca10g01634 579 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Seca10g01634 579 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 90 IPR000504 GO:0003723
Seca10g01634 579 SUPERFAMILY RCC1/BLIP-II 208 480 IPR009091 -
Seca10g01634 579 SMART rrm1_1 39 109 IPR000504 GO:0003723
Seca10g01634 579 PRINTS Chromosome condensation regulator RCC1 signature 456 474 IPR000408 -
Seca10g01634 579 PRINTS Chromosome condensation regulator RCC1 signature 210 226 IPR000408 -
Seca10g01634 579 PRINTS Chromosome condensation regulator RCC1 signature 263 279 IPR000408 -
Seca10g01634 579 PRINTS Chromosome condensation regulator RCC1 signature 520 541 IPR000408 -
Seca10g01634 579 PRINTS Chromosome condensation regulator RCC1 signature 244 257 IPR000408 -
Seca10g01634 579 Gene3D - 189 435 IPR009091 -
Seca10g01634 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 422 IPR000408 -
Seca10g01634 579 Gene3D - 436 578 IPR009091 -
Seca10g01634 579 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 208 307 - -
Seca10g01634 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 314 365 IPR000408 -
Seca10g01634 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 209 260 IPR000408 -
Seca10g01634 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 261 313 IPR000408 -
Seca10g01634 579 SUPERFAMILY RNA-binding domain, RBD 24 119 IPR035979 GO:0003676
Seca10g01634 579 MobiDBLite consensus disorder prediction 1 38 - -
Seca10g01634 579 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 579 IPR000408 -
Seca10g01634 579 Gene3D - 1 115 IPR012677 -
Seca10g01634 579 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01634 Seca-Chr10 17909533 17917347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01634 1 182 Homeobox Transcription Factor Family AT1G27050 50.732 2.36e-49 168
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01634 - - gmx:100793672 939.102