Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01621 ATGGGTTCTGGGGACTACTACAAGATTCTAAAGGTGAACCGTGATGCCACCGATGAGGAGCTGAAGAAGGCTTATAAAAGGTTGGCCATGAAATGGCACCCTGATAAGAACCATCAATACCCTCTTAGGAAAGAAGAGTTTGAAGCCAAGTTCAAGCAGATATCTGAGGCTTATGATGTGCTCATTGACCCCAAGAAGCGCCAGATCTATGACCTCTACGGTCACTATCCCCTTAACTCTCATCGCTTCACCAAGGAAAATGATGATGGTGATGTTGGGAATACTCTGAAGGAAGATAAATCAACAGGGGTGATTGAAAGCAGGTTAACATGTACCCTTGAGGAGCTTTACAAAGGTTGCAGAAGGAAATTGAAAATCTCAAGGACTGTTCCTGATGAATTTGGAGAGTTGAAGTCTGTGGAAGAAACCTTGAAGATAGATGTTCAACCTGGTTGGAAGAAAGGCACAAAAATTACTTTCCCTGGGAAGGGCAACCAAGAACCAGGAGCTGCTCCAGCTGATCTAATTTTTGTGGTGGATGAGAAACCGCATGCTATTTTCAAAAGAGATGGAAAGGATTTGGTAGTGATCCAGAAGATATTACTTCTTGATGCTCTTGTTGGAAAGACTCTCAACTTGACAACCTTGGATGGTAGAGATATCACAATCCAAGTGACTGATATTGTGAGACCAGGCTATGAGCTAGTGGTCCCAAATGAAGGAATGCCTATTACAAAGGAACCCAGCAAGAAAGGAAACCTCAGAATCAAGTTTGATGTTATGTTTCCTTCAAGTCTGACCACACAACAGAAATATGATGTAAGAAGGATTCTAAGTGATGCTGATAGCTAA 852 0.4225 MGSGDYYKILKVNRDATDEELKKAYKRLAMKWHPDKNHQYPLRKEEFEAKFKQISEAYDVLIDPKKRQIYDLYGHYPLNSHRFTKENDDGDVGNTLKEDKSTGVIESRLTCTLEELYKGCRRKLKISRTVPDEFGELKSVEETLKIDVQPGWKKGTKITFPGKGNQEPGAAPADLIFVVDEKPHAIFKRDGKDLVVIQKILLLDALVGKTLNLTTLDGRDITIQVTDIVRPGYELVVPNEGMPITKEPSKKGNLRIKFDVMFPSSLTTQQKYDVRRILSDADS. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01621 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 187 271 IPR008971 GO:0006457|GO:0051082
Seca10g01621 283 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 278 - -
Seca10g01621 283 CDD DnaJ 5 63 IPR001623 -
Seca10g01621 283 ProSitePatterns Nt-dnaJ domain signature. 51 70 IPR018253 -
Seca10g01621 283 FunFam DnaJ-like subfamily B member 13 2 97 - -
Seca10g01621 283 Pfam DnaJ C terminal domain 105 263 IPR002939 -
Seca10g01621 283 ProSiteProfiles dnaJ domain profile. 5 74 IPR001623 -
Seca10g01621 283 SUPERFAMILY HSP40/DnaJ peptide-binding domain 106 184 IPR008971 GO:0006457|GO:0051082
Seca10g01621 283 Gene3D - 108 182 - -
Seca10g01621 283 Gene3D DnaJ domain 3 107 IPR036869 -
Seca10g01621 283 CDD DnaJ_C 105 266 - -
Seca10g01621 283 PRINTS DnaJ domain signature 7 25 IPR001623 -
Seca10g01621 283 PRINTS DnaJ domain signature 25 40 IPR001623 -
Seca10g01621 283 PRINTS DnaJ domain signature 46 66 IPR001623 -
Seca10g01621 283 PRINTS DnaJ domain signature 66 85 IPR001623 -
Seca10g01621 283 FunFam Dnaj homolog subfamily b member 101 182 - -
Seca10g01621 283 SUPERFAMILY Chaperone J-domain 3 86 IPR036869 -
Seca10g01621 283 Pfam DnaJ domain 5 71 IPR001623 -
Seca10g01621 283 Gene3D - 184 264 - -
Seca10g01621 283 SMART dnaj_3 4 66 IPR001623 -
Seca10g01621 283 FunFam DNAJ heat shock family protein 183 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01621 Seca-Chr10 17767149 17769519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01621 6 73 C2H2 Transcription Factor Family AT1G74250 36.232 3.10e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01621 K09510 - gmx:100778440 464.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01621 10 17767149 17769519 Seca10g01621 10 17767149 17769519 ECH
Seca10g01621 10 17767149 17769519 Seca10g01621 10 17767149 17769519 PCT