Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01613 ATGTCTCCACCACATCCCTCTACCTTAGCCACTCTCTCCTTCATTCTGCTACTGTTTTCCACCACATCCACATCTGCTCACACTCACACATGCTCTTCCAATCCAAACACCTCCACCACCACATACCCTTGCCCACCATTCCCTTCCAACCCCCCTTTCCCATTCTCTTCTTCACCAGGTTGTGGCCACCCTTCTTTCCAGCTAAACTGCTCCACTCCTCACTCTATCATCTCCATTAACAACCTCTCTTTCTCCATCCTCACTTACAAGCCCAACACTTCCTCCATTTTCCTCTCCCCTTACCACCCCATTCCCCAAAACACCTCACACCACACTTGCCCTGCTGCCTCTTCAGACTTCCCTTCCATCCCCATTCGATCCATCAATCTCTCTGGCTCCCCTTTCCGTGTCTCAGATGCTTCATGCTCTCGCCTCTCTTTCCTCCAACCATGCTCCCCTCCAACTCTGCCAAATTGCAGCCACTGCCCCTGGGAATGCAAGCTCATCAAGAACCCAGGTGAGATCCTCCAGGACTGCAGATCTATGCACCACTCTGCTTCTGACTCTGAACATAGCTGCCAACGTGATGTCCTTGGCTTCCTCAACGAATTTCTCGCTACTATAGGGATCGAGGTTGAGTGGGACGAAACACAAGACCCTTACTTCTCAAAATGCAAAGATTGTCATGCCAACAAAGGATTCTGTGGCTTCAATTCATCAGACCCAGAGAAGCAATTCCTCTGCTTCCGCTCCAAATCAACACTCTCACCACCTTGGATTCACAACGTCAAGCCAAACAGGACAACGATGTTCAGCCTCATCATCGCATTGACTTCATTGCTGCTCCTTCTCTCAGTAGCCACCGCCATTCTCCGCTCGAGAAGCTCCAAGCTGCCACGCACGGCGGAGGAAGACCCTACCACTGTCTTCCTCCACAACCAACGCTCCGCGAGCCTTCTCCCTCCGGTGTTCACCTACGAAGAGCTCGACTCCTCCACCAACCACTTCGACCCCAAGCGGAAAATCGGCGACGGAGGCTTCGGCACTGTCTATCTCGGCCACCTCCGTGACGGAAGGCTCGCGGCGGTGAAGCACCTCCACAGGCACCACAGCACCGCCGCGTTTTCCACCAAGTCGTTCTGCAACGAGATCCTGATTCTCTCCTCCATCGACCACCCTAACCTCGTGAAGCTTCACGGTTATTGCAGCGATCCGAGAGGGTTGATCCTCGTCTACGATTACGTCCCAAACGGAACCCTAGCGGATCACCTTCACGGTCCCAAGAAAGGTTCCTCGCTGACGTGGCAAACGAGGCTTGAAATCGCGCTTCAAACGGCGTTGGCGATGGAGTATCTTCACTTCTCGGTGGTGCCGCCGATAGTGCATAGAGATATAACCTCTTCTAATATCTTCATTGAAAAGGACATGAGGATCAAAGTGGGTGATTTTGGGCTCTCAAGGCTGTTAGTTTTGCAGGATACGACGTCGTCTTCGAACGGGTACGTTTGGACGGGTCCCCAGGGGACTCCCGGGTATTTGGATCCGGATTATCACCGGTCATTCCGGTTAACCGAGAAGAGTGACGTGTACAGTTTCGGGGTTGTGCTGTTGGAGCTTATATCGGGGCTCAGGGCGGTTGACCAGACTAGGGACAAGCGCGAGATGGCACTTGCTGACATGGTTGTGTCGAGGATCCACGCGGGGCAGCTCCACCAGGTGCTTGACCCGGTTCTTGGTTTGGACGGCGACGGCGCCGTGGCTGCGGTGGCGGAGCTAGCTTTCCGTTGTGTTGCTCCGGATAAGGATGACCGACCCGATTCGAAGGAGGTTGTGGAGGAGCTGAAGCGAGTACGGAGCCGGGCGCGTGGTGGGTTGCGGACGTCGGTGAGTTGTAACGGCGGCGGTGAAGTGGCGAAGGAGTGA 1923 0.5445 MSPPHPSTLATLSFILLLFSTTSTSAHTHTCSSNPNTSTTTYPCPPFPSNPPFPFSSSPGCGHPSFQLNCSTPHSIISINNLSFSILTYKPNTSSIFLSPYHPIPQNTSHHTCPAASSDFPSIPIRSINLSGSPFRVSDASCSRLSFLQPCSPPTLPNCSHCPWECKLIKNPGEILQDCRSMHHSASDSEHSCQRDVLGFLNEFLATIGIEVEWDETQDPYFSKCKDCHANKGFCGFNSSDPEKQFLCFRSKSTLSPPWIHNVKPNRTTMFSLIIALTSLLLLLSVATAILRSRSSKLPRTAEEDPTTVFLHNQRSASLLPPVFTYEELDSSTNHFDPKRKIGDGGFGTVYLGHLRDGRLAAVKHLHRHHSTAAFSTKSFCNEILILSSIDHPNLVKLHGYCSDPRGLILVYDYVPNGTLADHLHGPKKGSSLTWQTRLEIALQTALAMEYLHFSVVPPIVHRDITSSNIFIEKDMRIKVGDFGLSRLLVLQDTTSSSNGYVWTGPQGTPGYLDPDYHRSFRLTEKSDVYSFGVVLLELISGLRAVDQTRDKREMALADMVVSRIHAGQLHQVLDPVLGLDGDGAVAAVAELAFRCVAPDKDDRPDSKEVVEELKRVRSRARGGLRTSVSCNGGGEVAKE. 641
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01613 640 Gene3D Transferase(Phosphotransferase) domain 1 415 628 - -
Seca10g01613 640 FunFam Putative serine/threonine-protein kinase At1g18390 family 312 414 - -
Seca10g01613 640 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 13 620 IPR044652 GO:0004672
Seca10g01613 640 Pfam Protein tyrosine and serine/threonine kinase 339 614 IPR001245 GO:0004672|GO:0006468
Seca10g01613 640 ProSitePatterns Protein kinases ATP-binding region signature. 342 364 IPR017441 GO:0005524
Seca10g01613 640 Gene3D Phosphorylase Kinase; domain 1 311 414 - -
Seca10g01613 640 CDD STKc_IRAK 342 616 - -
Seca10g01613 640 ProSiteProfiles Protein kinase domain profile. 336 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca10g01613 640 SUPERFAMILY Protein kinase-like (PK-like) 317 614 IPR011009 -
Seca10g01613 640 ProSitePatterns Tyrosine protein kinases specific active-site signature. 460 472 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01613 Seca-Chr10 17710721 17712643 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01613 1 622 Receptor kinase-like Gene Family AT1G69910 62.675 0.0 763
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Seca10g01613 PK_Tyr_Ser-Thr 1.5e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01613 - - pcin:129299787 825.469