Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01611 ATGGCTAGAAATGATTTGAAGCTTTTGGGTGGTTGGTTCAGTCCATTTCCAGTGAAGGTGCATATTGCCCTTAACATCAAAGGTTTGGAATATGAGCTAGTTGAAGAGACCTTGAATCCCAAAAGTGACCTGCTTCTTCAGTCCAATCCTGTGTACAAGAAAATCCCAGTTCTAATCCATGGAAATAAACCCATCTGTGAATCTGCAAACATAGTTGAGTATATTGATGAGGTTTGGACCAATGCTCCTTCCATCCTTCCAACTAATGCTTATGACCGAGCTTTAGCTCGATTTTGGGCTGCCTACATTGATGACAAGTGGGCTCCGCCCATTGAAAATATTCTATTTGCTAAAGATGATGAGACAAAGAAGGCAAACTTTGAGCAAATGGAAGAAGGGCTTGTGATGTTGGAAGAAGTGTTCAACAAGTGCAGTCAAGGAAAGGCCTTTTTTGGAGGAGATAAGATTGGATTCATTGATATTACTTTTGGGTGCTATTTGAGCTGGATGAGAGTCACAGAAAAGATGAATGGCAAGAAGGTGCTTGATGAATCAAAGACTCCTGCTTTGGTTAAATGGGCTGAAGCATTTGCTGCTGATCCTGCTGTCAAGGGACATCTACCAGAGATTGACAAGCTTATTGGGTATGCCAAGTTTGTACAGCAAAAAGTGGCTGCTGCTAGTCTGCTGTTTGTCATAGAAATGGCTGGAAATGAGTTGAAGCTTTTGGGTGCCTGGTTCAGTCCATTTGCAGTGAGGGTGCAAATTGCCCTTAACATCAAAGGTTTGGAATATGAGCAAGTTGAAGAGACCCTGTATCCCAAAAGCGACCTTCTTCTTCAGTCCAATCCTGTGTACAAGAAAATCCCAGTTCTGATCCATGGAGATAAACCCATCTGTGAATCTGCAATCATAGTTGAGTATATTGATGAGATTTGGCCCAATGCCCCCTCCATCCTTCCATCTAATGCTTATGAGCGAGCTTTAGCTCGATTTTGGGCTGCCTACATTGATAACAAGTGGTTTCTGTCCATGCGAGATATGCTAATGGCTAAAAGTGATGAGGCAAAGAAGGCATACTTTGAGCAAACGGAAGAAGTGGTTGTGAGGTTGGAAGAAGTATTGAACAAGAGCAGTCAAGGAAAGACCTTTTTTGGAGGGGATAAAATTGGATTCATTGATATTGCTTTTGGGTGCTATTTGAGCTGGATGAGAGTCACAGAGAAGATGAATGGAAAGAAGGTGTTTGATGAAGCAAAGACTCCTGCTATGGTGAAATGGGCTGAAACATTTGCTGCTGATCCTGCTGTCAAGGGACTTCTACCAGAGGCTGACAAGATGGCTGGAAATGACTTGAAGCTTTTGGGTGGTTGGTTCAGTCCATTTGCAGTGAGGGTACAAATTGCCCTTAACATCAAAGGTTTGGAATATGAGCTAGTTGAAGAGACCCTGAATCCCAAAAGTGACCTGCTTCTTCAGTCCAATCCCGTGTACAAGAAAATCCCAGTTCTAATCCATGGAGATAAACCCATATGTGAATCTGTACACATAGTTGAGTATATTGATGAGGTTTGGACCAATGCTCCCTCCATCCTTCCAACTAATGCTTATGACCGAGCTTTAGCTCGATTTTGGGCTGCCTACATTGATGACAAGTGGTTTCTGTCCATGCGAGATATGCTAACTGCTAAAAATGATGAGGCAAAGAGGGGATACTTTGAGCAATTGGATGAAGTGGTTGTGAGGTTGGAAGAAGTGTTGAAGAAGTGCAGTCAAGGAAAGGGCTTTTTTGGAGGAGATAAGATTGGATTCATTGATATTGTTTATGGGTGCTATTTGAGCTGGATGAGAGTCACAGAAAAGATGAATGGAAAAAAAGTGCTTGATGAATCAAAGACTCCTGCTTTGGCGAAATGGGCTGAAACATTTGCTGCTGATCCTGCTGTCAAGGGACTTCTACCAGAGACTGACACTCTTATTGAGTTTGCTAAGGTTTTTCAGCAAAAATTATTGGCTGCTGCTGCTACGCCAAATTAA 2037 0.4242 MARNDLKLLGGWFSPFPVKVHIALNIKGLEYELVEETLNPKSDLLLQSNPVYKKIPVLIHGNKPICESANIVEYIDEVWTNAPSILPTNAYDRALARFWAAYIDDKWAPPIENILFAKDDETKKANFEQMEEGLVMLEEVFNKCSQGKAFFGGDKIGFIDITFGCYLSWMRVTEKMNGKKVLDESKTPALVKWAEAFAADPAVKGHLPEIDKLIGYAKFVQQKVAAASLLFVIEMAGNELKLLGAWFSPFAVRVQIALNIKGLEYEQVEETLYPKSDLLLQSNPVYKKIPVLIHGDKPICESAIIVEYIDEIWPNAPSILPSNAYERALARFWAAYIDNKWFLSMRDMLMAKSDEAKKAYFEQTEEVVVRLEEVLNKSSQGKTFFGGDKIGFIDIAFGCYLSWMRVTEKMNGKKVFDEAKTPAMVKWAETFAADPAVKGLLPEADKMAGNDLKLLGGWFSPFAVRVQIALNIKGLEYELVEETLNPKSDLLLQSNPVYKKIPVLIHGDKPICESVHIVEYIDEVWTNAPSILPTNAYDRALARFWAAYIDDKWFLSMRDMLTAKNDEAKRGYFEQLDEVVVRLEEVLKKCSQGKGFFGGDKIGFIDIVYGCYLSWMRVTEKMNGKKVLDESKTPALAKWAETFAADPAVKGLLPETDTLIEFAKVFQQKLLAAAATPN. 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01611 678 PANTHER GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING 242 447 IPR045073 -
Seca10g01611 678 SUPERFAMILY GST C-terminal domain-like 85 219 IPR036282 -
Seca10g01611 678 FunFam Glutathione S-transferase GSTU6 1 86 - -
Seca10g01611 678 SFLD Main.3: Omega- and Tau-like 236 448 IPR045073 -
Seca10g01611 678 SFLD Main.3: Omega- and Tau-like 2 227 IPR045073 -
Seca10g01611 678 SFLD Main.3: Omega- and Tau-like 449 674 IPR045073 -
Seca10g01611 678 Pfam Glutathione S-transferase, C-terminal domain 545 647 IPR004046 -
Seca10g01611 678 Pfam Glutathione S-transferase, C-terminal domain 338 435 IPR004046 -
Seca10g01611 678 Pfam Glutathione S-transferase, C-terminal domain 98 201 IPR004046 -
Seca10g01611 678 FunFam Glutathione S-transferase U9 320 454 - -
Seca10g01611 678 SFLD Glutathione Transferase (cytosolic) 2 227 IPR040079 -
Seca10g01611 678 SFLD Glutathione Transferase (cytosolic) 449 674 IPR040079 -
Seca10g01611 678 FunFam Glutathione S-transferase GSTU6 447 532 - -
Seca10g01611 678 SUPERFAMILY Thioredoxin-like 451 554 IPR036249 -
Seca10g01611 678 CDD GST_N_Tau 240 313 - -
Seca10g01611 678 CDD GST_N_Tau 6 79 - -
Seca10g01611 678 SUPERFAMILY GST C-terminal domain-like 531 666 IPR036282 -
Seca10g01611 678 CDD GST_N_Tau 452 525 - -
Seca10g01611 678 SFLD Main (cytGST) 236 448 - -
Seca10g01611 678 FunFam Glutathione S-transferase GSTU6 235 320 - -
Seca10g01611 678 Gene3D Glutaredoxin 230 319 - -
Seca10g01611 678 SUPERFAMILY GST C-terminal domain-like 319 447 IPR036282 -
Seca10g01611 678 FunFam Glutathione S-transferase U9 86 227 - -
Seca10g01611 678 SUPERFAMILY Thioredoxin-like 239 342 IPR036249 -
Seca10g01611 678 CDD GST_C_Tau 324 447 IPR045074 GO:0004364|GO:0006749
Seca10g01611 678 CDD GST_C_Tau 536 666 IPR045074 GO:0004364|GO:0006749
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 535 666 IPR010987 -
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 4 83 IPR004045 -
Seca10g01611 678 SUPERFAMILY Thioredoxin-like 5 107 IPR036249 -
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 238 317 IPR004045 -
Seca10g01611 678 Gene3D Glutaredoxin 451 531 - -
Seca10g01611 678 Gene3D Glutaredoxin 1 85 - -
Seca10g01611 678 Pfam Glutathione S-transferase, N-terminal domain 6 77 IPR004045 -
Seca10g01611 678 Pfam Glutathione S-transferase, N-terminal domain 452 523 IPR004045 -
Seca10g01611 678 Pfam Glutathione S-transferase, N-terminal domain 239 311 IPR004045 -
Seca10g01611 678 FunFam Glutathione S-transferase U9 532 673 - -
Seca10g01611 678 CDD GST_C_Tau 90 219 IPR045074 GO:0004364|GO:0006749
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 323 454 IPR010987 -
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 450 529 IPR004045 -
Seca10g01611 678 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 89 226 IPR010987 -
Seca10g01611 678 Gene3D - 320 450 - -
Seca10g01611 678 Gene3D - 532 675 - -
Seca10g01611 678 Gene3D - 86 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01611 Seca-Chr10 17694055 17701697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01611 447 664 Glutathione S-transferase Gene Family AT1G10370 57.078 6.04e-86 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01611 K00799 - pxb:103950895 553.132