Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01594 ATGGATCCGGCGGCAATGATCAACGGGGTTGCCAACACGGCGTCGTATCGCTTGGCGGAGATCTGGCAGTTTCCGTCGCCGAGTGCCGCCGAGTCCGGCGGTGGCTTGGGGCTGAGGAGGCCGCAGTTCGGGCACGGGTTCGGTGATTTCGCCACGTGTCCGATCCGGGACGATCCAGGTACTGACCCGATCGTTCCAGAGCAGAGGGCGGCTCCGGCGGCGAACCATGGCCGGAAAAGGCGCGACTCTGAGGAGGAATCAGTTAAGGGTGTCTCCACCAGCAATGGCGGTGGCGGTGGCAATGGCAATGGCGTGAATAATGGTGGTGGTGATGGAAAGCGGATTAAGACACCAGGGAACAGGAATGAGAACACTAAAGGTGAAGTAGAACCCAGTTCAGGAAAGCTTGCGGAGCAAACTACTACTCAGCCACCTCCTGAGCCTCCAAAGCAAGACTACATCCATGTCCGAGCCAGAAGGGGTCAAGCTACTGATAGCCACAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATCAGTGAAAGGATGAAAATTCTTCAGGATTTAGTCCCTGGTTGTAATAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCAGCGCCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGAGTGACCCCTGGCATTGAGGTGTTTCCTCATAAAGATTTTGATCAGCAAACATTTGATACAACCGCCATGCCATTTGCTTCACAAGCTACAAGAGAGTACAACCGGGGTTCATCACCAGAGTGGTTACATATGCAGGTGGGAAGTGGTTTTGAAAGAGCAACGTAG 852 0.5153 MDPAAMINGVANTASYRLAEIWQFPSPSAAESGGGLGLRRPQFGHGFGDFATCPIRDDPGTDPIVPEQRAAPAANHGRKRRDSEEESVKGVSTSNGGGGGNGNGVNNGGGDGKRIKTPGNRNENTKGEVEPSSGKLAEQTTTQPPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRVTPGIEVFPHKDFDQQTFDTTAMPFASQATREYNRGSSPEWLHMQVGSGFERAT. 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01594 283 Gene3D - 159 232 IPR036638 GO:0046983
Seca10g01594 283 FunFam Basic helix-loop-helix transcription factor 159 231 - -
Seca10g01594 283 MobiDBLite consensus disorder prediction 73 88 - -
Seca10g01594 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 162 212 IPR011598 GO:0046983
Seca10g01594 283 CDD bHLH_AtBPE_like 152 237 - -
Seca10g01594 283 Pfam Helix-loop-helix DNA-binding domain 166 213 IPR011598 GO:0046983
Seca10g01594 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 83 255 IPR024097 GO:0006355
Seca10g01594 283 SMART finulus 168 218 IPR011598 GO:0046983
Seca10g01594 283 MobiDBLite consensus disorder prediction 49 152 - -
Seca10g01594 283 MobiDBLite consensus disorder prediction 124 141 - -
Seca10g01594 283 Coils Coil 209 229 - -
Seca10g01594 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 160 230 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01594 Seca-Chr10 17512611 17516043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01594 1 241 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G59640 52.869 6.09e-67 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca10g01594 HLH 2.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01594 - - gmx:100794893 371.703
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01594 10 17512611 17516043 Seca10g01594 10 17512611 17516043 ECH
Seca10g01594 10 17512611 17516043 Seca10g01594 10 17512611 17516043 PCT