Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01588 ATGACGCCGGAAAGTGACGTCACGTCGTCATCGTCTCCGGCAGCATCCTTCAGGCTCCGTTGGGACGTGTTCCTGAGTTTCAGGGGCACCGACACGCGTGACACCTTCACAAAGGACCTCTACGAAGCACTCCATGCCCGCGGGGTTCGGGTCTTCCGTGACGATGATGGGTTGGGTCGGGGCGAGGAGATACAAGCGAGTCTTCTAGAAGCTATTGAAGACTCTGCAGCCTCTGTTATTGTTCTGTCCCCTGATTATGCCTCTTCACGTTGGTGCCTCGAGGAGTTGGCCAAGATTTGTGACTGTGGAAGGCTCATTCTGCCCGTTTTCTATCGGGTCGACCCGTCTGATGTACGAAAGCAAAAAGGTCCCTTTGAGGAGGCTTTTAGGTCTCATGCAAACAAGTTTCAGGCAGAGAAGGTTCAGCTCTGGAAAGATGCTATGGCAAAAGTCGGTGGAATTGCTGGATGGGTTTTTCAACAGAACAGTGACAGTGAAAAGCTCATTAGAGTTTTGGTGGAAACGATTATGAAGCAGATGAGGAATACTCCACTGAATGTGGCTCAGTATACAGTTGGGCTTGATGATAGAGTTGAAGAGTTAAGAAAATTGTTTGATGTGAAATCCAATGATGTAAGGGTTTTGGGATTGTATGGGATGGGTGGTATTGGTAAGACAACCCTCGCCAAGAGCCTCTTCAATAGCCTTGTTGTTCATTTTAACCGTCGAAGCTTCATTTCAAGTGTTAGAGAAGTTTCAAAAACTGGTGATGATGGTTTGGTTTCTCTTCAAAACAGAATTCGCAGTGATCTTTCCTCTGATGGAACAATGGATCTTGTCAATGATGTTAATGATGGTATTTCTGCTATCAAAAGAATAGTACAGGAAAATCGAGTTCTGTTAATCCTGGATGATGTTGATGATGTAAAACAGCTTGAATTTTTGATGGGTAAGAGGGAATGGTTTTACAAAGGAAGCCGTGTTGTAATAACCACAAAGGATAAACAAGTTTTACTTGAGAGTTATGTTGATATGCACTATGAGGTGCAGGAATTGGAATTCTCTCAAGCACTAGAATTATTCTGTTACCATGCAATGAGAAGAAAGGAACCTGCAGATGGGTTTTTGGATCTGTCAAAACAAATTGTAGAAAAGACAGGGAGATTGCCTTTGGCTTTGGAAGTTTTTGGGTCTTTTCTGTTTGATAAGAGGACAATTAAGGAGTGGAAAGATGCTTTGGAGAGGCTAAAACAGATTCGTCCTGCTTATATTCAGGATGTGTTGAAGATTAGTTTTGATACTTTAGATGAACAAGAGCAGTGTATATTTCTTGACATTGCTTGTTTGTTTGTGCAGATGAAAATGAAGAGAGATGAAGTGATTGATATATTGAATGGTTGTAAGTTTAATGGAGAGATAGCAATGACTGTTCTCATTGGAAGAAGTTTAATTAAAATAAAAAAAGATAATGTATTGTGGATGCATGATCTAGTTAGAGATATGGGAAGGCAAATTGTTCAAAATGAAAGCCTTACAGATTATGGTCAACGTAGCAGGCTGTGGGATCGTGACGAAATCTTGACTGTCTTGAAGAGTAAGAAGGGAACAAGAAGTGTTCAAGGGATTGTCCTAGATTGTGTAAAGAGAAGCAAGTTAATTCTTAGAGATCGCCGTGCTGATGAAATTACTTGGGACAACTTTCGCCAAAAGCCCAGTTGTAAATCTGCATCAGCATGTATAAAAGAGAGGTATAAAAAGTATTTGCGGGATAGAGAAGAGAAAGCAAAAGAGTTTACACTTCAGACAATGCACTTTGAACCAATGGTTTCCTTAAGATTGCTTCAAATTAATTATTCGAAATTGGAAGGGAAATTTAGTCTTCCTCCAGGACTGAAGTGGTTACAATGGAAAGGATGCCCATTAAGGCACATGCCTTCAAGCTTTAATCCTTTGGAGCTTGCTGTGATTGATCTCTCAGAAAGTAAGATTGAAACGCTGTGGGGCAGGCGCAGCAACAAGGTGGCTGAGCACTTGATGGTTTTAAACCTATCCAGCTGCAACAAATTGACAGCAATTCCTGATTTAACTGGGTATCTATCCCTGAAAAAAATCGTTTTGGAAGATTGCACTAATTTATCTAGGATTCATGAATCACTTGGAAATCTAAGTACCTTGGTTCACTTGAACTTGCGGCACTGCCATAACCTTATGGAATTACCCGGTGATGTCTCTGGGCTGAAAAATCTCGAGAACCTTATTCTTTCTGACTGCTGGAAATTGAAAGCATTACCTACAGACCTAAGCTGCATGGTTTCTTTAAGACAACTTCTTCTTGATAAAACTGCTATAACTGAGCTACCTGAGTCCATCTTCCACCTCACAAAACTTGAAAACTTGAATGCAAATGAATGCCAGTTTTTGAAGAGGTTACCTACCTGTATTGGGAAACTGAGCTCACTGCAAGAATTGACCCTGAACCATACAGCATTGGAGGAATTGCCCGATTCTCTAGGTTATTTGGAAAACCTTGAGATGCTTGGTTTAGTGGGATGTAAGTCACTCTCAGTGATTCCTAACTCTGTTGGGAAACTTACTTCATTGAAAAAATTATCTTTTGATGTTAGTGGAATTAAAGAATTGTCTGCTTCTATTGGTTCTTTAACATATTTAAGGGAACTTTCTTTTGGTGGCTGTACTTTTATTAACGAATTACCTGTGTCAATAGAAGCGTTAGTTTCAGTTTTTGAGCTTCAGTTAGATGGGACATCCATTTCCATTTTGCCAGATCAAATTGGAGCCATGAAAATGCTAAAAAAGCTTGAGATGGGAAGATGTCAGCATCTTAAGTTCCTTCCAGCATCAATTGGCAATTTGTCAGCTCTTACCACTTTGGACATGAATAACACTAACATTACTGAATTGCCAGAGTCAATAGGAATGTTGGAAAACCTTGTCAGGTTGAGATTAGACATGTGCAAACAGCTCCAAAGGCTTCCAGCCTCCATTGGAAAGTTGAAATCTTTGCAATGGTTATTTATGAAGGAAACAGCAGTTACCCACCTACCTGAAAGCTTTGGGATGCTTTCAAGCCTGGTAGAACTAGACATGGAAAGAAGACCTTATCTTAATATGGTTGGAACTAACAGACAAGAAGAACCTAATTCAGAGACAATCTTAACTTCTTTTTGTAATCTAACCTTGCTGGAACAGCTAAATGTTCATGGATGGAGAATAGTTGGAAAAATTCCAGATGATTTTGAGAAGCTATCATCACTAGAAACTTTGAGTTTAGGCCACAACAATATTTGCAGTCTTCCAGCAAGCATGACAGGCCTTTCCTATCTCAAAAAGCTTTGGTTATCAGACTGCAGGGAGCTCATGTTTCTGCCTCCTCTTCCCTCTAGCTTAGAGGAGCTTAATATTGCAAATTGTACAGAAGTTGAGTACATATCTGATATTTCAAACTTGGACAGATTAGAAGAGTTCAACCTTACAAATTGTGAAAAGGTGGAGGATATACCGGGTCTTGAACATTTGAAGTCCTTAACAAGGTTGTACATGAATGGTTGCATTGGATGCTCCCTTGCCGTAAAGAGGAGATTCTCCAAGGTTCTACTTAAAAAATTAGAGATTTTGATTATGCCTGGAAGCAGAGTTCCAGATTGGTTTTCAGGAGATTCAGTTGTATTTTCCAAGCGAAGAAACCGTGAGCTTAAAAGTATCATTTGTGTTGGTGTGCTCTCTTTCAACAATATACCTGAAAGTGAAAACCAAAGAGATAAACTGCAGTTAGTGGATGTTCAGGGAAAAATCTTCAATTTGACTGATAATGTTTATAGCACAACGTTTCGCTTGCTTGGAGTACCTAGGACAAATGAAGACCATGTTTTTTTGCGCAGATTTGGAGTTCATTCTTCCTTAGTTTCTCAATTAAAAGATAAGTATACCTTACGTTTGACAAAGCGAAACCCACCGCGAGTTGAGGAGCTGGAGCTGAAGAGTTGTGGGATTTGTTTAGTTTTTGAAGGTGATGATGATTATGAGGGAGATGAAGGATCACTAAACGAAAGTCAATACTCTGTTTCACAAAAATTAGCTAAGTTCTTTAATTCCATTGCAGAAGATGACCTGTGTGTGTGA 4140 0.3998 MTPESDVTSSSSPAASFRLRWDVFLSFRGTDTRDTFTKDLYEALHARGVRVFRDDDGLGRGEEIQASLLEAIEDSAASVIVLSPDYASSRWCLEELAKICDCGRLILPVFYRVDPSDVRKQKGPFEEAFRSHANKFQAEKVQLWKDAMAKVGGIAGWVFQQNSDSEKLIRVLVETIMKQMRNTPLNVAQYTVGLDDRVEELRKLFDVKSNDVRVLGLYGMGGIGKTTLAKSLFNSLVVHFNRRSFISSVREVSKTGDDGLVSLQNRIRSDLSSDGTMDLVNDVNDGISAIKRIVQENRVLLILDDVDDVKQLEFLMGKREWFYKGSRVVITTKDKQVLLESYVDMHYEVQELEFSQALELFCYHAMRRKEPADGFLDLSKQIVEKTGRLPLALEVFGSFLFDKRTIKEWKDALERLKQIRPAYIQDVLKISFDTLDEQEQCIFLDIACLFVQMKMKRDEVIDILNGCKFNGEIAMTVLIGRSLIKIKKDNVLWMHDLVRDMGRQIVQNESLTDYGQRSRLWDRDEILTVLKSKKGTRSVQGIVLDCVKRSKLILRDRRADEITWDNFRQKPSCKSASACIKERYKKYLRDREEKAKEFTLQTMHFEPMVSLRLLQINYSKLEGKFSLPPGLKWLQWKGCPLRHMPSSFNPLELAVIDLSESKIETLWGRRSNKVAEHLMVLNLSSCNKLTAIPDLTGYLSLKKIVLEDCTNLSRIHESLGNLSTLVHLNLRHCHNLMELPGDVSGLKNLENLILSDCWKLKALPTDLSCMVSLRQLLLDKTAITELPESIFHLTKLENLNANECQFLKRLPTCIGKLSSLQELTLNHTALEELPDSLGYLENLEMLGLVGCKSLSVIPNSVGKLTSLKKLSFDVSGIKELSASIGSLTYLRELSFGGCTFINELPVSIEALVSVFELQLDGTSISILPDQIGAMKMLKKLEMGRCQHLKFLPASIGNLSALTTLDMNNTNITELPESIGMLENLVRLRLDMCKQLQRLPASIGKLKSLQWLFMKETAVTHLPESFGMLSSLVELDMERRPYLNMVGTNRQEEPNSETILTSFCNLTLLEQLNVHGWRIVGKIPDDFEKLSSLETLSLGHNNICSLPASMTGLSYLKKLWLSDCRELMFLPPLPSSLEELNIANCTEVEYISDISNLDRLEEFNLTNCEKVEDIPGLEHLKSLTRLYMNGCIGCSLAVKRRFSKVLLKKLEILIMPGSRVPDWFSGDSVVFSKRRNRELKSIICVGVLSFNNIPESENQRDKLQLVDVQGKIFNLTDNVYSTTFRLLGVPRTNEDHVFLRRFGVHSSLVSQLKDKYTLRLTKRNPPRVEELELKSCGICLVFEGDDDYEGDEGSLNESQYSVSQKLAKFFNSIAEDDLCV. 1380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01588 1379 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 182 - -
Seca10g01588 1379 Pfam TIR domain 21 183 IPR000157 GO:0007165
Seca10g01588 1379 ProSiteProfiles TIR domain profile. 19 180 IPR000157 GO:0007165
Seca10g01588 1379 SUPERFAMILY L domain-like 905 1218 - -
Seca10g01588 1379 Coils Coil 1379 1379 - -
Seca10g01588 1379 Gene3D - 352 436 IPR042197 -
Seca10g01588 1379 Gene3D Ribonuclease Inhibitor 1045 1203 IPR032675 -
Seca10g01588 1379 Gene3D Ribonuclease Inhibitor 874 1044 IPR032675 -
Seca10g01588 1379 Gene3D Ribonuclease Inhibitor 740 873 IPR032675 -
Seca10g01588 1379 Gene3D Ribonuclease Inhibitor 599 739 IPR032675 -
Seca10g01588 1379 Gene3D - 19 179 IPR035897 -
Seca10g01588 1379 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 157 IPR035897 -
Seca10g01588 1379 SMART till_3 20 154 IPR000157 GO:0007165
Seca10g01588 1379 SUPERFAMILY L domain-like 493 928 - -
Seca10g01588 1379 SMART LRR_typ_2 864 887 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 817 840 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 1005 1027 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 770 793 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 1089 1112 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 958 981 IPR003591 -
Seca10g01588 1379 SMART LRR_typ_2 911 934 IPR003591 -
Seca10g01588 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 446 IPR027417 -
Seca10g01588 1379 PRINTS Disease resistance protein signature 214 229 - -
Seca10g01588 1379 PRINTS Disease resistance protein signature 293 307 - -
Seca10g01588 1379 PRINTS Disease resistance protein signature 720 736 - -
Seca10g01588 1379 PRINTS Disease resistance protein signature 386 400 - -
Seca10g01588 1379 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 821 IPR044974 GO:0006952
Seca10g01588 1379 Gene3D - 180 345 IPR027417 -
Seca10g01588 1379 ProSiteProfiles Leucine-rich repeat profile. 1091 1112 IPR001611 GO:0005515
Seca10g01588 1379 Pfam NB-ARC domain 199 420 IPR002182 GO:0043531
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01588 Seca-Chr10 17269373 17276615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01588 7 895 WRKY Transcription Factor Family AT4G12020 28.256 3.30e-84 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01588 - - gmx:100784137 2075.44