Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01587 ATGCCGTCTCACGCGGATCTGGACCGGCAGATCGAGCATCTGATGGAGTGCAAGCCTCTGCCGGAGGCAGAGGTGAAGGCTCTGTGCGATCAGGCGCGGGCGATTCTGGTGGAAGAGTGGAACGTTCAACCGGTGAAGTGTCCCGTTACGGTGTGCGGCGATATTCATGGCCAGTTCTACGATCTCATCGAGCTCTTCCGGATAGGAGGAAATGCACCTGATACCAATTACCTATTCATGGGCGATTATGTAGACCGTGGGTACTATTCAGTGGAGACTGTTACACTTTTGGTGGCCTTGAAAGTACGTTATAGAGATAGAATTACAATCCTCAGGGGAAATCATGAGAGCCGGCAAATTACTCAAGTGTATGGCTTCTACGATGAATGCTTGAGAAAATATGGAAATGCCAATGTCTGGAAATTCTTTACCGACTTGTTTGATTATTTACCTCTGACTGCCCTCATTGAGAGTCAGATTTTCTGCTTGCATGGAGGTCTCTCACCGTCTTTGGATACACTGGATAATATCCGGGCCTTGGATCGCATACAAGAGGTTCCGCATGAAGGACCCATGTGTGATCTCTTGTGGTCTGATCCAGATGATCGTTGTGGTTGGGGAATATCTCCACGCGGTGCTGGATATACATTTGGACAGGATATAGCTGCTCAGTTCAATCATACCAATGGTCTTTCCCTGATTTCTAGAGCTCACCAGCTTGTCATGGAAGGGTACAATTGGTGCCAGGTGACTGACCTAATATATTGA 768 0.4792 MPSHADLDRQIEHLMECKPLPEAEVKALCDQARAILVEEWNVQPVKCPVTVCGDIHGQFYDLIELFRIGGNAPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRDRITILRGNHESRQITQVYGFYDECLRKYGNANVWKFFTDLFDYLPLTALIESQIFCLHGGLSPSLDTLDNIRALDRIQEVPHEGPMCDLLWSDPDDRCGWGISPRGAGYTFGQDIAAQFNHTNGLSLISRAHQLVMEGYNWCQVTDLIY. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01587 255 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 5 252 IPR047129 GO:0004722
Seca10g01587 255 ProSitePatterns Serine/threonine specific protein phosphatases signature. 111 116 IPR006186 GO:0016787
Seca10g01587 255 CDD MPP_PP2A_PP4_PP6 6 249 - -
Seca10g01587 255 SMART pp2a_7 20 255 IPR006186 GO:0016787
Seca10g01587 255 Pfam Calcineurin-like phosphoesterase 48 239 IPR004843 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 230 250 IPR006186 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 48 75 IPR006186 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 145 171 IPR006186 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 174 201 IPR006186 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 110 134 IPR006186 GO:0016787
Seca10g01587 255 PRINTS Serine/threonine phosphatase family signature 77 104 IPR006186 GO:0016787
Seca10g01587 255 SUPERFAMILY Metallo-dependent phosphatases 6 252 IPR029052 -
Seca10g01587 255 Gene3D - 2 255 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01587 Seca-Chr10 17245536 17249232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01587 49 225 Calmodulin-binding Proteins AT5G63870 36.449 1.49e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01587 K04382 - gmx:100794029 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01587 10 17245536 17249232 Seca10g01587 10 17245536 17249232 ECH
Seca10g01587 10 17245536 17249232 Seca10g01587 10 17245536 17249232 PCT