Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01585 ATGTCTCGCACGTGCTCACAGTGCGGAAACAACGGCCACAATTCCCGAACATGCACCGACGGCGGAGCCGCCGCGTCCGGCGGAGAGAACGGCTTCATGCTATTCGGCGTGCGAGTCACCGAAGGTAGCTCCTCTTTCAGGAAAAGCGCTAGCATGAACAACCTTTCTCAGTACGAGCAACAACCTCCGCAAGATTCCAACGCCGCCGATGCCGGCTACGCCTCCGACGACGTCGTTCACGCCTCCGGTCGCAGCCGCGAGCGCAAGCGAGGTGTTCCTTGGACGGAAGAAGAGCATAGGCTATTCCTATTGGGGTTGCAAAAGGTTGGCAAAGGAGATTGGAGAGGGATTTCTAGAAACTTCGTTAAAACTCGCACTCCAACTCAGGTTGCAAGTCATGCTCAGAAGTATTTCCTCCGCCGTCACAACCAGAATCGCCGCCGCCGGAGATCTAGCCTTTTTGACATCACCACCGATACGGTGCTTTTTCTTTCTCATTTTCTTCAACTTCCGAATAATAAATAA 525 0.5371 MSRTCSQCGNNGHNSRTCTDGGAAASGGENGFMLFGVRVTEGSSSFRKSASMNNLSQYEQQPPQDSNAADAGYASDDVVHASGRSRERKRGVPWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVLFLSHFLQLPNNK. 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01585 174 ProSiteProfiles SANT domain profile. 89 142 IPR017884 -
Seca10g01585 174 MobiDBLite consensus disorder prediction 48 71 - -
Seca10g01585 174 CDD SANT 93 138 IPR001005 -
Seca10g01585 174 SMART sant 90 140 IPR001005 -
Seca10g01585 174 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Seca10g01585 174 Pfam Myb-like DNA-binding domain 93 138 IPR001005 -
Seca10g01585 174 MobiDBLite consensus disorder prediction 48 68 - -
Seca10g01585 174 Gene3D - 92 143 - -
Seca10g01585 174 PANTHER TRANSCRIPTION FACTOR KUA1 1 160 - -
Seca10g01585 174 NCBIfam myb-like DNA-binding domain, SHAQKYF class 89 140 IPR006447 GO:0003677
Seca10g01585 174 FunFam transcription factor MYB1R1 92 143 - -
Seca10g01585 174 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 142 IPR017930 -
Seca10g01585 174 ProSiteProfiles Myb-like domain profile. 86 138 IPR001005 -
Seca10g01585 174 SUPERFAMILY Homeodomain-like 88 141 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01585 Seca-Chr10 17229854 17231788 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca10g01585 Myb_DNA-binding 3.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01585 - - var:108322503 283.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01585 10 17229854 17231788 Seca10g01585 10 17229854 17231788 ECH
Seca10g01585 10 17229854 17231788 Seca10g01585 10 17229854 17231788 PCT