Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01575 ATGGGTCTGAAGGTGATGCTTCTTCTGAGCCTTGTTGTTTTACAAAGTTTTGTAATACCAACCTGCCATTGCCAGATCAGTTTTCCTCCTCAGAACATTGAAACTTTCTATCCTGAAACTCCAGAACCAGAAATTCCCCCAACACAACCTCCTGAGCCACCACCAAAGCAACCACTATCACCAGGGCCGGGACCAGTGGCAGCATCATCAAGTTCTTCATCAAACAATAAGGTGGTAACAGCAGTAGCTGCAACAGCAGCAAGTACTCTAGTTGTTTCTGGTTTGATTTTCCTTTTAGTTCAAAGATGCTTAAGAACAAGGAGGAGAAAGGTGATGACCAACACTGCTTCTGCTGCACAAAGGCCTGTTGTGCCTCAGGTTAGTGTGTTTGAGAGAATGGATGGAAACATCAAGGGACTTATTGTTGATGAGGATGGTTTGGATGTGGTTTATTGGAGAAAACTTGAAGGTAAAGGTAAAAACTCAAACAAGGGTTTTCAAAAGGAGGTCTTGCATAGTCCCAAAAATAAAGAAGATGATGAACATGAAGGAAAACAAGGGAAAAAATCTGAGTCCATTCAAGAAATTCCTCTGCTTAGAGGGAAATCTTCAACTTCCCACTTGGATATATTTCCAGAAGAGTCATATACAATTATGAGAATTCTACCTCCTGCTCCTCCTCCCATTGTTCCTATTTCTAGCAAGAGTATTAAGAAACAAGACTCTCCTACTAAACCATTTAATCTAGCCCTTCTACCTTCATCACCAAAAAGACCCTCCACTTCTTTCTCATCAATTCAAAAAATGACAACTCCTGCACCACCACCTCCCCTTCCAACAATACCTGATAGAAAGAGTCAAGCACCAACACCTCCTCCAGCTCCTCCTCCACCAATCCCAAATAAAGGGAGTCCACCACCACCACCTCCACCAATTCCAGATAGAAAGAGCTTAGCATCACTACCTCCTCCTCCACCAATCCCTGCTAGAAAGAGTCCTGCACCACCACCACCTCCTCCACCAATCTCTTCTAAAAAGAGTTCAGCACCACCTCCTCCTCCACCAAAGGTAGGTGGTTTTAAGTCATCATCAAAACCACCACCAATCCCTATTGAAAAACCAGTTTCCACCAGCAAGCAAGAAAGTTCTTCAGGTGAAGTAAAACTGAAGCCATTGCATTGGGATAAGGTGAATACTAATCTTGAACACTCCATGGTGTGGGACAAAATTGACCATGGTTCTTTCAGGGTTGATGATGATCTTATGGAAGCTCTCTTCGGGTATGTTGCCACTAAACCAAACAGTAATAATATACCAAAAGGAAATGACTCAGGGAGTCCAAGCAAGGATGCCTCTGCTCCATCAACAAATGCCTTCCTTCTTGACCCCAGAAAATCACAGAACATTGCTATAGTTTTGAAATCTCTGGCAGTCTCAAGAAAAGAAATTATTGAAGCACTTGTTGATGGTCAAGGCCTTAATACAGACACCATTGAAAAGCTTGCTAGAATAGCACCAACAGAAGAAGAGCAATCCCAAATACTTGAATACAAAGGAGATCCATCAAAACTTGCTGCAGCTGAATCTTTCTTGCATCACATCCTCAAAGCTGTTCCTTCAGCATTTAAACGATTGCATGCCATGCTATTCAGGTTGACCTATGACTCTGAGATTCTAGAAATCAAGGAGTTTCTACAGACCCTTGAGGTGGGGTGTAAGGAGCTTCGGAACCAAGGAGTGTTTGTGAAGCTTCTTGAAGCAGTACTTAAGGCTGGAAATCGCATGAATGCAGGTACTCATAGAGGTAATGCTCAAGCTTTCAACTTGGCATCTCTAAGGAAGCTCTCTGATGTGAAGAGCATTGATGGAAAAACCACATTGCTTCACTTTGTGGTTGAAGAAGTAGTTCGTTCTGAAGGAAAACGTGCTGTTCTTAACCGCAACCACAGTTTTAGTCGTAGTAGCAGTAGGAACAACAACAGCATTGAAGATCCTCAGAACTCTGCTGCTTTAAATGAACAAAGACAAAGGGAATATATAACTCTAGGATTACCAATTGTAGGAGGGGTCAGTTCTGAGTTTTCCAATGTAAAGAAAGCAGCACTTACAGATTATAACAATTTTATTGGTTCAATCTCAGCACTCTCAGCCAGGATATTTGAAACTAGGCAACTTATTTCCCAGTGTGGAAATGATAAAGGAGGAAAATTTGTGAGAGAAATGAACCGTTTTCTTGAAACTGCCGAGGAGGAATTGAAATCAGTGAGGGAAGAGCAAACAAGGGTAATGCAGCTTGTGAAGAGAACAACAGATTACTATCAAGGAGCTTCCAAAGATAGTGCAGAACACCCTCTTTATCTATTTGTCATAGTCAAGGATTTTCTGGGAATGGTTGATCAAGCCTGCATAGAGATTGCTCGTAACATGCAAAAGAAGAAGATACCTAAAGCAAATTCTGGGTGA 2463 0.4194 MGLKVMLLLSLVVLQSFVIPTCHCQISFPPQNIETFYPETPEPEIPPTQPPEPPPKQPLSPGPGPVAASSSSSSNNKVVTAVAATAASTLVVSGLIFLLVQRCLRTRRRKVMTNTASAAQRPVVPQVSVFERMDGNIKGLIVDEDGLDVVYWRKLEGKGKNSNKGFQKEVLHSPKNKEDDEHEGKQGKKSESIQEIPLLRGKSSTSHLDIFPEESYTIMRILPPAPPPIVPISSKSIKKQDSPTKPFNLALLPSSPKRPSTSFSSIQKMTTPAPPPPLPTIPDRKSQAPTPPPAPPPPIPNKGSPPPPPPPIPDRKSLASLPPPPPIPARKSPAPPPPPPPISSKKSSAPPPPPPKVGGFKSSSKPPPIPIEKPVSTSKQESSSGEVKLKPLHWDKVNTNLEHSMVWDKIDHGSFRVDDDLMEALFGYVATKPNSNNIPKGNDSGSPSKDASAPSTNAFLLDPRKSQNIAIVLKSLAVSRKEIIEALVDGQGLNTDTIEKLARIAPTEEEQSQILEYKGDPSKLAAAESFLHHILKAVPSAFKRLHAMLFRLTYDSEILEIKEFLQTLEVGCKELRNQGVFVKLLEAVLKAGNRMNAGTHRGNAQAFNLASLRKLSDVKSIDGKTTLLHFVVEEVVRSEGKRAVLNRNHSFSRSSSRNNNSIEDPQNSAALNEQRQREYITLGLPIVGGVSSEFSNVKKAALTDYNNFIGSISALSARIFETRQLISQCGNDKGGKFVREMNRFLETAEEELKSVREEQTRVMQLVKRTTDYYQGASKDSAEHPLYLFVIVKDFLGMVDQACIEIARNMQKKKIPKANSG. 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01575 820 MobiDBLite consensus disorder prediction 235 269 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 35 72 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 270 373 - -
Seca10g01575 820 SUPERFAMILY Formin homology 2 domain (FH2 domain) 336 814 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 162 201 - -
Seca10g01575 820 Coils Coil 738 765 - -
Seca10g01575 820 Gene3D Formin, FH2 domain 399 819 IPR042201 -
Seca10g01575 820 SMART it6_source 379 813 IPR015425 -
Seca10g01575 820 PANTHER FORMIN-RELATED 321 809 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Seca10g01575 820 MobiDBLite consensus disorder prediction 40 62 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 647 669 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 231 387 - -
Seca10g01575 820 MobiDBLite consensus disorder prediction 162 190 - -
Seca10g01575 820 Pfam Formin Homology 2 Domain 383 798 IPR015425 -
Seca10g01575 820 ProSiteProfiles Formin homology-2 (FH2) domain profile. 379 820 IPR015425 -
Seca10g01575 820 MobiDBLite consensus disorder prediction 431 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01575 Seca-Chr10 17074105 17076655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01575 356 814 FH2 protein (formin) Gene Family AT1G70140 57.701 2.06e-178 530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01575 10 17074105 17076655 Seca10g01575 10 17074105 17076655 ECH