Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01574 ATGGAGATGGACGGTGTCGTTTCTTTTGATGTCTTGCCGGAGGATTCTGAAGAGGTTCATGTCTTGGCCGTCGATGATAGCCTCGTTGATCGAAAGGTCATTGAGCGGTTACTCAAAATTTCAGCTTGTAAAGTTACTGCTGTGGATAGTGGAATCAGAGCACTGCAATTTTTGGGGCTGGATGAGCAGAGAAAGACCACTGAATCTGATGGTTTTGTTAAGGTGGATCTAGTTATCACAGACTATTGCATGCCTGGAATGACTGGTTATGAGTTGCTCAAGAAAATCAAGGTTAAAAATTGGATTCCTAAACCTTTCATTTTTCCCATGTTATTGATAATGTTAGTGAAAACTGGTTGA 360 0.4111 MEMDGVVSFDVLPEDSEEVHVLAVDDSLVDRKVIERLLKISACKVTAVDSGIRALQFLGLDEQRKTTESDGFVKVDLVITDYCMPGMTGYELLKKIKVKNWIPKPFIFPMLLIMLVKTG. 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01574 119 ProSiteProfiles Response regulatory domain profile. 20 119 IPR001789 GO:0000160
Seca10g01574 119 Pfam Response regulator receiver domain 21 100 IPR001789 GO:0000160
Seca10g01574 119 Gene3D - 15 116 - -
Seca10g01574 119 PANTHER TWO-COMPONENT RESPONSE REGULATOR 19 99 IPR045279 GO:0009736
Seca10g01574 119 SUPERFAMILY CheY-like 19 108 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01574 Seca-Chr10 17063304 17064962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01574 1 97 Response Regulator Gene Family AT1G10470 69.072 7.59e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca10g01574 Response_reg 1.2e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01574 K14492 - gmx:100779833 165.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01574 10 17063304 17064962 Seca10g01574 10 17063304 17064962 ECH