Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01546 ATGGGTTCATCCTCAGAAAAACCTTCCTCCTCTGCATTGAAGCTTTTTGGTTTCCCTTTAAGTACTGCTATTATATGCAGTGAGGAAGCTCCTCAGAAAATCGAGTGTCCATACTGTGACCGCAAATTTCAGAATTTTCAAGCTTTGGGAGGTCACCAAAATGCGCATAGGAGAGAGAGGCTAATGGCTAGGCTATCCCGACTGCACTATATTCATCCACATCAAAACAACAGCCAATTGCTTCTACACACTGAACAACCAACTGTATTATTATCACAAACCTCTGCTGCTGATGCTGATCATGAAGCTCAGATCTGGAGAGAATTACCAAAGCTACCTGTGGCGGAGCCACCAGGTACGCGCCACCCTCCTATAAGACAGGTACCAAGGCCAGTACCAGGGGTTGATAATGATAGTAATCTCGATCTTGAATTGAGACTAGCTACCAGCTCCTTTGAGGAATCTCGGAGATGA 474 0.4515 MGSSSEKPSSSALKLFGFPLSTAIICSEEAPQKIECPYCDRKFQNFQALGGHQNAHRRERLMARLSRLHYIHPHQNNSQLLLHTEQPTVLLSQTSAADADHEAQIWRELPKLPVAEPPGTRHPPIRQVPRPVPGVDNDSNLDLELRLATSSFEESRR. 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01546 157 ProSitePatterns Zinc finger C2H2 type domain signature. 36 56 IPR013087 -
Seca10g01546 157 MobiDBLite consensus disorder prediction 116 130 - -
Seca10g01546 157 MobiDBLite consensus disorder prediction 112 157 - -
Seca10g01546 157 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 61 IPR013087 -
Seca10g01546 157 Pfam C2H2-type zinc finger 35 59 - -
Seca10g01546 157 PANTHER ZINC FINGER PROTEIN 5 6 150 IPR044299 GO:0010090
Seca10g01546 157 SUPERFAMILY beta-beta-alpha zinc fingers 34 62 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01546 Seca-Chr10 16807319 16807792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01546 10 76 C2H2 Transcription Factor Family AT1G67030 40.909 7.64e-12 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g01546 zf-C2H2_6 1.8e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01546 - - gmx:102669455 129.028