Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca10g01542 ATGGAAAGGGATGTCTGTGATCTTTCCCCTGCATGGGATGGTGATAATGGTAATTCTATGGAGAAAAGGCTCAGGTTATTTGGCTTTGAGCTAAATCCATCAAAGAATAATAATGAGGGTTGTGTCAAAGAGGCTGGTGAAGGTGATGAAAGTGTGCACTCCTCTAACTCAGTTTCATCAGGAGGAGAGAAAACTGTTCAAGAGAAGAGCTCAGCCAGAGACCCAGATGAGAGAAAGTTTGAGTGCCAATACTGTTTCAAGGAATTTGCAAACTCACAAGCATTAGGAGGCCATCAAAATGCTCACAAGAAAGAAAGAATGAAGAAGAAAAGATTGCAGCTTCAAGCTAAGAGGGCTAGCATAAACTATTACCTACAACTTTTTCAAACCAACCATGGTTCTGATACTCCTTGGTTCTATGATCCCTCTTCCTATAACTCTGAGTTCACCTTATGTGAAGAATCTCAGATTAGCTTCAATTCAAATGTTCAAGATACCAACTTTTTTGTTGATCAGAAATCTAGTTGGTATTCTCTACCATCCCAACCTCCTTCTCAACAAGATACTTGCATGTTCACTTTCTCCAATACAGATAATAGGCCTTTCATCTTCAAGCCTTGTCACTTCCCTGCTTCAAACCAGAGCCATAGTAAAGCTTTAGATCTTCAACTAGGCCTCAACTTGGAGTCAAATACAAGGAGCTTGAGAAGGGCATAA 717 0.4031 MERDVCDLSPAWDGDNGNSMEKRLRLFGFELNPSKNNNEGCVKEAGEGDESVHSSNSVSSGGEKTVQEKSSARDPDERKFECQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQAKRASINYYLQLFQTNHGSDTPWFYDPSSYNSEFTLCEESQISFNSNVQDTNFFVDQKSSWYSLPSQPPSQQDTCMFTFSNTDNRPFIFKPCHFPASNQSHSKALDLQLGLNLESNTRSLRRA. 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca10g01542 238 MobiDBLite consensus disorder prediction 51 66 - -
Seca10g01542 238 ProSitePatterns Zinc finger C2H2 type domain signature. 82 102 IPR013087 -
Seca10g01542 238 Gene3D Classic Zinc Finger 54 132 - -
Seca10g01542 238 PANTHER ZINC FINGER PROTEIN 5 19 229 IPR044299 GO:0010090
Seca10g01542 238 SUPERFAMILY beta-beta-alpha zinc fingers 76 107 IPR036236 -
Seca10g01542 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 80 107 IPR013087 -
Seca10g01542 238 FunFam zinc finger protein 5 54 133 - -
Seca10g01542 238 MobiDBLite consensus disorder prediction 31 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca10g01542 Seca-Chr10 16713910 16714626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca10g01542 77 142 C2H2 Transcription Factor Family AT1G68360 58.209 5.16e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca10g01542 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca10g01542 - - gmx:100799857 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca10g01542 10 16713910 16714626 Seca10g01542 10 16713910 16714626 ECH